NCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCAGCTTCCTTCTCTTGGTGTATGGTCTACACTCAAGACAGAT
CTCAAACACCCTGACGTGAAGCTTCTATACTGCTTGTGTCTCCTGAAAAA
ATTCAAATATTGAACATCATCTATCCATCTATGGGGAGGATCAGGAGGAG
TGAAGTGAATGGGTGGTTAGATTGATGAATAGTTGGGTGAATGCATGGAT
CTATGATAGAATAGATAGATAGATAGATAGATAGATAGATAGATAGATAG
ATAGATAGATAGATATATATATATATTCATAGATACATAAATAGATACAT
AACATACATACATGCATAGATAGATACATAGATACATAGATTCATAGATA
GATACATAGATAGATACATAGACAAATATATAGATACGTAGATAGAGACA
TAGATTGATGAATACCATAGACTGGCAGGAATATGGCATAATCTAGATGT
TTGCATTGATATGTGTGTGAGCCAGTGGATGGGTACTTATATGCCCATCT
ATGGTTATTATATTTGATATTTACCGCTCATCCCTCGTTCATCTCTCCTT
TCGTGTGTGTTTTTTTTTTTTTCCTGCTTGTTTTTTATGTTTTCTTCCTC
TCGCTATATTCTTTAAATTTTTAGTTTCCTGTTGATTACATCTTGATTGG
TCTATTTTGATTTATATATTTTCTTATCTTTTAAGTCCGCTATTATGTTA
CGTAATACTTTCATGCTATTTTCCTGA

NCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCACAGACAGTGCAAGGGTAGCAA
AGATTAATGCAGCCATCCCTACGCCTGTCAGATTGATAACCACAACAAAA
ATGTCTTCAAAGACAGAAACTGCAAACACTCAGAGACAGATACCTCCACC
TGCTTATATGAAAGGCACTGAGCCAGTGATTAACCACCCTATTTATTCCC
AAAAGACACAGCACACTGTTGGTATCACTAGTGGACTTGACCAAATGTCA
CAGGAGAAATGGTGCTTTCTTAGGACATCTGCAGGAGCAGAAGTAGCCCT
GACTGAGTCCCTGTTGGGGGCATCACAACTTCCTCTCATCTTTTCTATTT
TTATTTTGAATTATGTATGTATGAGTCTGTCTCAGTGTGCTTCCTGCACG
CAAGTACAGTGTCCATGGAAGGCAGAAAAGGCTGTCTGATCTGGAGTTGG
CATGAGAGGCAGTTGGAAGCCCTAGGATAGGTGCTGGGGACCCAACCCAT
GCCCACTACTAGGGCAATACGAGTGCTTAAACCTGGGCCATCTCTCCTAT
CGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAAANAN
ANANANANNNNNNNNNNNNNNNTNTNNTNNNNTTNNTTNTTTTTTTTTTT
NNTTTTTTTTTNTTTTTTTTTTTTTTTTTNTTTTTTNTTTTTTTTTTTTT
TTTTTNTTTTTTTTTTTNT

Query= MSMg01no451_b20.g1 MSMg01no451_b20.g1 CHROMAT_FILE:
MSMg01no451_b20.g1 PHD_FILE: MSMg01no451_b20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:15 2005
         (572 letters)



>mm_chr1_85101522_85102495
          Length = 974

 Score = 1017 bits (526), Expect = 0.0
 Identities = 557/570 (97%), Gaps = 7/570 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacagacagtgcaagggtagcaaagattaatgcagccatccctacgcctgtcagattgat 60
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 201 cacagacagtgcaagggtagcaaagatcaatgcagccatccctacgcctgtcagattgat 260

                                                                       
Query: 61  aaccacaacaaaaatgtcttcaaagacagaaactgcaaacactcagagacagatacctcc 120
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 261 aaccacaacaaaaatgtcttcaaagacagaaactgcaaatactcagagacagatacctcc 320

                                                                       
Query: 121 acctgcttatatgaaaggcactgagccagtgattaaccaccctatttattcccaaaagac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acctgcttatatgaaaggcactgagccagtgattaaccaccctatttattcccaaaagac 380

                                                                       
Query: 181 acagcacactgttggtatcactagtggacttgaccaaatgtcacaggagaaatggtgctt 240
           ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 381 acagcacactgctggtatcactagtggacttgatcaaatgtcacaggagaaatggtgctt 440

                                                                       
Query: 241 tcttaggacatctgcaggagcagaagtagccctgactgagtccctgttgggggcatcaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcttaggacatctgcaggagcagaagtagccctgactgagtccctgttgggggcatcaca 500

                                                                       
Query: 301 -ac-ttcctctcatcttttctatttttattttgaattatgtatgtatgagtctgtctcag 358
            || ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 501 caccttcatctcatcttttctatttttattttgaattatgcatgtatgagtctgtctcag 560

                                                                       
Query: 359 tgtgcttcctgcacgcaagtacagtgtc-----catggaaggcagaaaaggctgtctgat 413
           ||||||||||||||||||||||||||||     |||||||||||||||||||||||||||
Sbjct: 561 tgtgcttcctgcacgcaagtacagtgtcgtgtccatggaaggcagaaaaggctgtctgat 620

                                                                       
Query: 414 ctggagttggcatgagaggcagttggaagccctaggataggtgctggggacccaacccat 473
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctggagttggcatgagaggcagttggaagccctaggataggtgctggggacccaacccat 680

                                                                       
Query: 474 gcccactactagggcaatacgagtgcttaaacctgggccatctctcctatcgtgtgtgtg 533
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gcccactactagggcaatacgagtgcttaaacctgggccatctctcctatcgtgtgtgtg 740

                                         
Query: 534 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 563
           ||||||||||||||||||||||||||||||
Sbjct: 741 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 770


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 62
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 974
Length adjustment: 10
Effective length of query: 562
Effective length of database: 964
Effective search space:   541768
Effective search space used:   541768
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)