BAC Information

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BAC

Clone NameMSMg01-451F08
Chromosome1 (Build37)
Map Location 94,339,086 - 94,525,924
singlet/doubletdoublet
Overlap geneNdufa10, Olfr1416, Olfr1415, Olfr1414, Olfr1413, Olfr1412, Olfr1411, Olfr1410, Olfr12
Upstream genePer2, Traf3ip1, Asb1, Twist2, Hdac4, LOC100040419, LOC665883
Downstream geneMyeov2, Otos, Gpc1, Ankmy1, Dusp28, LOC100040511, Rnpepl1, Capn10, Gpr35, Aqp12, Kif1a, Agxt, 2310007B03Rik, E030010N08Rik, Sned1, Mterfd2, LOC665966, Pask, Ppp1r7, Tmem16g, Hdlbp, Sept2, Farp2, Stk25
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-451F08.T7 (MSMg01no451_f08.b1)MSMg01-451F08.TJ (MSMg01no451_f08.g1)
ACCAG538849AG538850
length756742
length of high quality
(start - end)		192 (126 - 317)621 (83 - 703)
definitionCHROMAT_FILE: MSMg01no451_f08.b1 PHD_FILE: MSMg01no451_f08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:21:32 2005CHROMAT_FILE: MSMg01no451_f08.g1 PHD_FILE: MSMg01no451_f08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:21:32 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,339,086 - 94,339,277)(94,525,304 - 94,525,924)
sequence
NAAGACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAAAAAGGCG
CGGAATTCTTAGGGTTACTAAAAAGGCCTATAAAATCTAGTGAGGGATGC
TCTGTCCCGGGTTCTGGTTAGAACGCACAAGCACTTGAACATACATAAAA
GCACCCTAAGTTCCCAGTATCTAACTGTGTGCTTGTCTGTGGGCTGGAGG
CCATGCTGAATCTAAACCAAAAATTAGTTCTTGGGAGGTTGCAAAGGAAG
CTCAAGACCCTGCTGCCTCTGGGGAGGACCCTTCGATGCTACAGGATGCA
CAGGTACTTCTGTTTTCATATTTTTTAAGTCACTTGCCTGGAGCGCAGAG
CTATTCCATCCACAGAGCAAGAACCAGCCCCTTACACACAAGCACAAGAG
GGATCTCAGTCTCCCGAGTCTGGAGCGGGCCCTGTGCCCGAGTCGCTAGA
CAGCTCACCTACTNCACCCAGGGAGGGCGGACCTGTGCTGTGAGCCCTAC
TGTTCCCAGCCCCCATTTCACCGTACAATGCTCCCCTTTGCTATGTGCTT
AGGAAAAACTCCCAGAAACAGAACTGCCTTGCTGAAGCAAAAAAGCCTGA
ATAAGAAGGTGTGGAAAAGCCCCCCCGCCCCCAGGGGTTTAACTTGACCG
GTGTGGAAAAACTTGGCCGGAATTAATGGGGCGGAAGGGTTAGGGGGAAA
AAATCCACCCCTGTTTCCTCCCTTAAAAAACAATCCCGGAAACCTGGGGC
CTTTAG

NTTTTCCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTAACCATGGAGGAAAA
ACTAACCTGAGTTTAAGACATTATATTGACTCAAAACAACAACACAAAAA
CCAATCAACCAAACATACTTGTATCAATATGAAAGTTGTAAAATTGGAGA
AAGGTTAGCAAATTATATAACCAATAAAGGGCTTATATCCAGAACACATA
GAGTTTTGACAATAAATATAAAAGAAAAAACAATGCAAGAGAATGGTGGA
TATGCCATATATACATCTCCCAAATGCCCAAATAGCTATAAATGTGTAGA
AAGCTGGTTAAACTTTTCATCTTTCATGTTTCCATCTTTTTTCTTTCTTC
TATACTTTGAAAAGTACTTTGACTTTACCTTACTGTCAAAAAAGTAAAAG
AGAAAGGAAGGAAGGAAGAAAGCTTTTATGTGTTAACTATGATGCCTGAC
TGTGTAATCTCATTATTTAGAAGCCTAAGGTAGGAGGATTGCTGTGAGTT
TAATACTAGTCTAGGACACATAGTAAGACTGTCCTTAACACAAACAAACA
AACAAATAAAACATTTAAAAATGAAATCTTGTATGCTTTTATTTTCAATT
CTCCTCTTATTTTGGTTATGAATTTTCTCATGATTGGGAATTTTTTATGG
TGTTAAAAATTTTCAAATCTCTAGGTCATTTCTCTTCTCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no451_f08.b1 MSMg01no451_f08.b1 CHROMAT_FILE:
MSMg01no451_f08.b1 PHD_FILE: MSMg01no451_f08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:32 2005
         (192 letters)



>mm_chr1_94338886_94339477
          Length = 592

 Score =  371 bits (192), Expect = e-107
 Identities = 192/192 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacaagcacttgaacatacataaaagcaccctaagttcccagtatctaactgtgtgcttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacaagcacttgaacatacataaaagcaccctaagttcccagtatctaactgtgtgcttg 260

                                                                       
Query: 61  tctgtgggctggaggccatgctgaatctaaaccaaaaattagttcttgggaggttgcaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctgtgggctggaggccatgctgaatctaaaccaaaaattagttcttgggaggttgcaaa 320

                                                                       
Query: 121 ggaagctcaagaccctgctgcctctggggaggacccttcgatgctacaggatgcacaggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggaagctcaagaccctgctgcctctggggaggacccttcgatgctacaggatgcacaggt 380

                       
Query: 181 acttctgttttc 192
           ||||||||||||
Sbjct: 381 acttctgttttc 392


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 192
Length of database: 592
Length adjustment: 8
Effective length of query: 184
Effective length of database: 584
Effective search space:   107456
Effective search space used:   107456
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no451_f08.g1 MSMg01no451_f08.g1 CHROMAT_FILE:
MSMg01no451_f08.g1 PHD_FILE: MSMg01no451_f08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:32 2005
         (621 letters)



>mm_chr1_94525099_94526119
          Length = 1021

 Score = 1193 bits (617), Expect = 0.0
 Identities = 620/621 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtaaccatggaggaaaaactaacctgagtttaagacattatattgactcaaaacaacaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 agtaaccatggaggaaaaactaacctgagtttaagacattatattgactcaaaacaacaa 767

                                                                       
Query: 61  cacaaaaaccaatcaaccaaacatacttgtatcaatatgaaagttgtaaaattggagaaa 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 766 cacaaaaaccaatcaaccaaacatacttgtatcaatatgaaagttgtaaaatgggagaaa 707

                                                                       
Query: 121 ggttagcaaattatataaccaataaagggcttatatccagaacacatagagttttgacaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 ggttagcaaattatataaccaataaagggcttatatccagaacacatagagttttgacaa 647

                                                                       
Query: 181 taaatataaaagaaaaaacaatgcaagagaatggtggatatgccatatatacatctccca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 taaatataaaagaaaaaacaatgcaagagaatggtggatatgccatatatacatctccca 587

                                                                       
Query: 241 aatgcccaaatagctataaatgtgtagaaagctggttaaacttttcatctttcatgtttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 aatgcccaaatagctataaatgtgtagaaagctggttaaacttttcatctttcatgtttc 527

                                                                       
Query: 301 catcttttttctttcttctatactttgaaaagtactttgactttaccttactgtcaaaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 catcttttttctttcttctatactttgaaaagtactttgactttaccttactgtcaaaaa 467

                                                                       
Query: 361 agtaaaagagaaaggaaggaaggaagaaagcttttatgtgttaactatgatgcctgactg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 agtaaaagagaaaggaaggaaggaagaaagcttttatgtgttaactatgatgcctgactg 407

                                                                       
Query: 421 tgtaatctcattatttagaagcctaaggtaggaggattgctgtgagtttaatactagtct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 tgtaatctcattatttagaagcctaaggtaggaggattgctgtgagtttaatactagtct 347

                                                                       
Query: 481 aggacacatagtaagactgtccttaacacaaacaaacaaacaaataaaacatttaaaaat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 aggacacatagtaagactgtccttaacacaaacaaacaaacaaataaaacatttaaaaat 287

                                                                       
Query: 541 gaaatcttgtatgcttttattttcaattctcctcttattttggttatgaattttctcatg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 gaaatcttgtatgcttttattttcaattctcctcttattttggttatgaattttctcatg 227

                                
Query: 601 attgggaattttttatggtgt 621
           |||||||||||||||||||||
Sbjct: 226 attgggaattttttatggtgt 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1021
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1011
Effective search space:   617721
Effective search space used:   617721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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