MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-451H24
Chromosome	1 (Build37)
Map Location	88,722,373 - 88,722,548
singlet/doublet	singlet
Overlap gene	4930429A22Rik
Upstream gene	Cab39, Itm2c, 4933407L21Rik, Gpr55, Spata3, 2810459M11Rik, Psmd1, Htr2b, Armc9, B3gnt7, EG383538, Ncl, Snord82, Nmur1, 1700019O17Rik, LOC100040414, Ptma, Pde6d, Cops7b, Nppc
Downstream gene	EG620213, LOC208256, Akp5, Alpi, Akp3, Ecel1, 1700027L20Rik, Chrnd, Chrng, Eif4e2, Efhd1, Tnrc15, LOC100040600, LOC100040591, 3110079O15Rik, Ngef, LOC620454, Neu2, Inpp5d, Atg16l1, Sag
Link	Open Mouse BAC browser

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BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-451H24.T7 (MSMg01no451_h24.b1)	MSMg01-451H24.TJ (MSMg01no451_h24.g1)
ACC	AG538974	AG538975
length	785	1,581
length of high quality (start - end)	179 (47 - 225)	---
definition	CHROMAT_FILE: MSMg01no451_h24.b1 PHD_FILE: MSMg01no451_h24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:21:46 2005	CHROMAT_FILE: MSMg01no451_h24.g1 PHD_FILE: MSMg01no451_h24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:21:46 2005
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	NCCCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG GAATTCTGAGAATTCTATTATGTAATCCCAATGTGTTATTGTTTTTGAAA TATACTATAAGGTTCATTTAGGCACTGTATAGTACAATTTTTATTTCATG TTAAATAGATACAAGATTTTTTACCATTTTATTTAGTATTTAGAGTCAAG ATTATAATAGCTCCATAGAATGACCTNAAAATTTTNTTTTTTTTACTAGT TTCTGTTTTGTTCCAGAATAGCTGGTATAAACTGTGAATTAATTTTTTTT AAGGTTAGGTAAAACTCATTGTAAAATTGTTTGCACCTGTTGTTTTTCAG AAAATGAGATTGTTGTTTTCAAACACATTAATTGATATTTTTAAATTATG AATTTCCCTCTTCTAATTTTGGNATAAGTTAAATAAGAATTTATACATTN CAAGTGAATTGGNCATGGTTGGAATTTCCTAAAACCTTTTCCAATTTTTT AAAATTAATTTTTTTAAACCCTAGGGTGGAAAAGGGTTTTAAAAACCCTA AAATTCCCGGGATTTTTAAATAATTTTTAAACCCCCCCCTTTTCCCAAAA TCTCTCCTCCGGGGGGGAGAGGGGCCCCCCCCCCTGTGGGGGCACACAAT AAAAGAGGGGCCCCCTTCTTAAAAAATAGGGGAGGCCCCCCCTCCCCCCC GGGGGGGGGGGGGGGAAAAAAAAAAAAAATCTCTCCTCCTCCTCCCTTCN ATCTTTTTCTTATTTTCTTCCTTTCACACCCCCAC	GTACCTGGCATCTGAGTGCATATGCGCATTGATGCGTATACCGTCTATAG GTCTCTGTCTGCTACACGTTACGTGCTTGAGTATCTATTTACGCAAGTGC ATACTCAGACGCGCAGACTCCTACGTCTTCTGTGTTGCCTNCTCCTACGT ACAGCTTATTGTTGTAGATATACCGTATCCTGCATCGCCTTGTGCGTAAA CGTACGTATGCATGTNGTAACGTGCAGAGCCTATACGTGCAATAGTGTAT GTGTGCGAANGATTAACTCATCCCGCCTTACTCCTCTTCTTCTACGTGGC GTTCTCTGTGTATCTGTTTGTCTAGTTATTCGCGCCTACATCGCGACGGT CCGTATCATTTAATCGTTGTGTTAAATGCATAACTGTGCGCGCGGTCTGT GCTAATTCTGGTCTGACGCTATCTGTAGAGATTCTTGTATAGTACTCGGT GGTAAGTGTTGCCGCCGCTCATAGTGATGTCTGCGTTATTGCGAGACGAG CTAGCACGAGAGCTCTCTCCTTCCACTCTCTTGCGCTCTCCGCTCCTGTC TTCGTTTCGCGCCATCCTCACTCAACGCGTACGCACCTGTATATGTAGGG AGTCTCCGCGCGCGGCACTTACGGTCATGCATTACTTGTCNCACCATCCC CTTGTATCGCAGTACGAGTAGAGCGCTGCTATCGCCAACGGCTCGTCCGT CGTCGCTATTATATATGTTAACACGAGAGNATGAGATCGCCTGATAAGAT TCATGGATATTGTCGATCATGCACCATACGACGCGCGTTATTCTGTATAT NACAATATGTATATACGTCGGCATATGTGTGACCGCGCGCGTCTCTGCCG CGCGTCGGCGCAGCNTACAATATTCGATCGACTACGATTATGACGCATAA GGTNGCGTGCGTGCGCGTGATAGTAGAGTTATATGCAACTCACCTTCGCC GCGTTCGAGACCGTGTACATGTACAATATGTGCGCTTTATAACAGACNCG GTCTGATACGTCGTGTGGTCATCGCATCCGATATTTTCATGCCTAGTATT GTGCGCGCTCATTCGTGCTCTGTGTACTAGATANTATGATATGCAGTAAG AGGTGTGTATACCGAAGACGNTTATGGCTGAGCGCTGTTCGCGCGCGGAA TTGNAGGATACTCTTANCGTATCNANCGGTNGTACGCGTACGCTCCGCTC GTTCAATCGCGCCCGCTCATACGTGTGCGTTGTTCTGATGCGTACGTATG TCGCTATATCCAGTCTACGCGTGGCTATTACGCTGTCGCGCTACGTGTGT CTCGTACATTCACTCTGACTGTGATGACGCGCGCCTTGTCGCACGCGTGC AGCTCACCTGTAGCCTCTGTGTAAGCGGCGCGATTAGTACCTCTCTCTCT ACTACATATCTAATTGTTGCCTACCACACGTCTTCACTTGTGACCACGTG CCACTGACTCTATATCACGCATCTCATCTTATGCCAATACACTCCACTTC ATACGCTAACACCGTTATAGTTGCAGCATCTGTATATCCCNGTCGCGCTN CTACGTGTGCGCTCATATATCATTATCCTCG
quality values	Open. Hide. 0 3 6 6 8 8 10 8 9 9 17 19 23 23 37 37 37 22 22 23 20 24 24 37 43 43 29 26 28 26 28 25 22 12 8 6 7 6 6 8 16 13 18 18 20 20 26 48 48 48 36 35 35 35 31 31 39 37 37 23 22 8 8 8 8 9 24 27 29 30 33 33 33 33 41 47 36 36 36 36 36 38 57 57 59 57 57 53 53 53 53 53 53 53 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 51 51 50 50 48 48 46 46 46 46 57 50 50 50 50 50 51 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 54 59 57 59 59 59 68 59 50 50 50 50 50 53 50 50 50 50 50 50 59 57 57 57 50 50 50 50 50 37 37 37 37 21 17 3 0 3 17 19 33 33 21 17 3 0 3 17 19 37 59 59 50 47 48 48 48 48 59 59 59 59 41 41 41 32 32 39 37 30 26 25 30 30 36 32 27 27 32 30 37 39 41 37 34 32 32 37 31 37 41 43 40 36 36 27 24 20 22 22 22 29 30 30 37 44 44 44 44 41 37 25 25 18 18 18 32 28 32 41 32 34 34 32 41 41 39 39 31 31 35 37 30 30 23 29 19 19 16 16 16 24 26 30 30 25 24 30 14 14 14 18 16 20 34 31 27 22 8 8 7 9 9 9 12 13 13 13 11 12 12 23 24 25 25 20 20 31 16 17 14 12 14 14 17 17 24 19 27 27 31 25 24 22 14 14 14 19 24 35 31 31 23 23 22 20 17 17 10 10 10 13 13 10 12 12 11 11 11 18 22 9 10 6 6 6 7 11 17 12 12 3 0 3 9 8 8 10 11 14 14 14 8 10 8 8 6 6 7 7 9 9 11 10 13 12 12 11 3 0 3 8 8 7 7 7 10 12 16 14 8 3 0 3 8 8 10 11 10 8 8 8 8 8 8 10 10 9 9 9 9 12 12 10 10 10 10 19 16 13 12 8 8 8 12 11 15 16 10 10 10 15 19 8 8 6 6 6 6 14 17 19 9 6 6 6 6 6 10 13 12 12 12 11 12 10 10 10 10 10 12 10 11 9 10 9 14 15 15 12 12 11 14 11 14 14 8 8 8 8 8 8 6 6 6 6 6 6 11 13 11 10 8 8 8 8 8 8 11 10 9 11 10 10 13 12 9 9 9 20 10 10 10 19 16 19 14 12 11 11 11 9 9 9 9 9 16 9 8 10 8 8 8 8 8 8 8 8 9 9 9 13 13 13 8 8 8 8 9 11 11 9 9 10 11 14 17 21 19 22 15 10 9 9 7 6 8 8 8 8 10 10 10 10 10 10 8 8 6 6 6 7 10 10 10 12 11 13 8 8 8 8 10 9 8 6 6 6 8 6 8 10 10 8 8 8 8 8 10 12 6 6 6 6 8 10 21 22 28 21 15 8 8 8 11 12 17 10 10 10 19 16 9 9 9 19 27 37 19 19 13 10 13 8 6 6 7 7 14 14 14 19 11 10 9 8 8 8 10 8 8 7 11 11 8 8 8 8 8 8 8 8 8 8 8 6 6 8 3 0 3 12 13 13 15 13 11 9 7 7 8 8 8 11 8 8 9 9 9 9 10 6 8 6 6 6 6 8 8 15 22 12 9 9 9	Open. Hide. 6 6 6 6 6 6 6 7 10 10 8 8 6 6 8 6 10 9 7 7 8 8 8 6 7 6 6 8 8 10 9 9 10 10 13 10 8 8 8 6 6 8 6 6 6 6 8 8 8 7 6 6 6 6 6 6 6 8 10 7 6 6 6 8 7 10 11 18 9 10 10 11 6 6 6 6 6 6 6 8 8 8 7 7 7 13 6 6 6 6 6 7 8 8 8 11 7 7 7 6 6 6 6 6 6 6 6 9 10 10 10 13 17 12 11 10 10 8 8 7 6 6 6 6 6 8 10 10 9 9 9 9 14 11 12 8 8 8 8 3 0 3 8 8 8 8 8 9 11 10 13 10 9 9 9 8 8 6 6 8 8 8 8 7 6 6 8 8 8 8 8 8 8 8 8 8 8 8 9 9 8 8 8 6 6 6 6 8 10 12 9 8 6 6 6 6 6 6 8 7 7 7 7 7 11 10 7 6 6 6 6 6 8 8 3 0 3 7 6 6 8 6 6 10 10 10 9 9 9 10 10 8 8 8 8 10 8 8 8 12 10 13 10 11 11 11 11 11 11 13 10 8 8 8 8 8 6 6 3 0 3 6 8 8 8 8 6 6 6 6 6 8 6 9 7 7 8 8 7 7 7 8 8 6 6 8 8 8 8 11 9 10 11 8 6 8 7 9 9 9 9 7 7 7 6 8 6 6 6 7 6 6 6 13 8 9 9 8 12 10 9 7 6 8 7 8 6 6 8 8 8 8 8 8 8 8 8 8 8 8 9 8 8 8 8 8 8 7 9 7 8 6 8 8 8 6 8 9 7 9 7 7 6 6 6 6 8 8 8 8 8 8 6 6 7 8 11 11 13 18 10 11 9 9 9 9 6 6 6 6 6 12 9 9 8 6 6 6 6 6 6 8 10 8 8 8 10 8 8 10 8 6 8 6 6 8 6 6 6 8 6 6 6 6 10 10 10 6 6 6 6 7 12 10 17 6 6 6 6 6 8 8 8 8 8 8 6 6 6 6 6 6 9 9 9 9 10 10 8 8 8 8 8 10 10 8 8 8 9 9 9 8 8 8 10 8 8 8 8 10 9 10 10 10 8 10 6 6 8 10 10 8 8 9 8 8 8 6 6 6 6 6 6 8 8 8 10 6 6 6 6 6 6 9 9 10 10 12 11 8 6 6 7 6 6 6 6 6 10 10 9 8 8 8 10 10 9 9 9 9 10 12 10 13 8 8 8 8 9 9 15 8 8 6 6 15 11 9 10 9 9 7 8 6 6 7 6 6 6 8 8 6 6 6 6 6 6 8 12 12 11 6 6 6 6 7 8 10 13 15 12 6 6 6 6 6 6 8 8 8 8 8 8 8 8 9 9 8 12 14 12 12 6 6 6 6 8 8 10 8 9 6 6 6 6 8 6 8 10 8 10 10 10 11 13 8 8 8 8 3 0 3 6 7 6 6 6 6 10 11 8 8 6 6 6 6 6 8 8 8 8 8 8 8 9 10 10 11 11 11 11 10 8 8 8 6 6 6 6 6 6 7 9 7 6 6 6 6 6 8 8 6 8 6 6 6 6 8 6 8 6 6 8 12 10 8 6 6 8 10 8 8 12 9 8 8 8 8 8 13 6 6 6 6 10 7 8 8 3 0 3 9 8 8 6 6 10 10 8 8 8 8 8 8 6 6 6 6 6 6 6 6 9 8 8 8 8 6 6 6 7 7 8 8 10 10 9 9 9 11 9 9 9 9 9 8 8 8 8 10 10 10 10 9 9 9 9 9 9 9 9 10 6 6 6 6 8 6 9 3 0 3 6 8 6 6 7 8 8 8 6 6 6 6 6 9 9 10 10 8 8 8 10 6 6 6 6 6 6 6 6 6 6 6 8 8 10 10 9 9 9 9 10 10 15 15 14 10 10 10 11 8 8 6 6 6 6 6 8 13 10 10 10 3 0 3 8 13 10 11 11 8 8 6 6 6 6 6 6 6 6 8 8 10 8 10 8 8 8 8 12 10 13 13 8 8 8 6 6 6 6 6 3 0 3 10 10 11 11 11 11 11 11 11 11 10 10 13 8 8 6 6 6 6 8 8 6 6 6 6 10 10 10 8 8 8 8 8 8 10 8 6 6 6 6 6 6 6 6 6 6 8 6 6 6 6 6 8 10 8 8 8 8 8 8 8 8 8 8 9 8 8 10 10 10 11 9 9 10 10 10 8 8 8 8 11 10 10 8 6 6 6 6 8 8 6 3 0 3 8 8 6 6 6 7 10 10 8 8 8 8 8 8 8 8 8 8 8 8 8 10 10 6 6 6 6 6 10 8 6 6 6 6 6 7 7 7 6 10 9 9 9 8 9 9 9 9 9 10 11 13 10 8 8 8 8 8 8 6 6 6 6 6 6 8 8 8 8 8 6 6 8 8 9 8 8 8 8 8 8 8 8 3 0 3 9 8 8 6 6 6 6 11 10 10 10 8 8 8 6 6 6 8 8 8 8 8 8 11 10 9 9 8 8 8 8 8 7 9 3 0 3 6 6 6 7 8 8 10 9 9 9 9 8 8 8 6 6 6 6 8 8 8 10 8 9 8 8 8 8 8 8 3 0 3 6 6 6 10 6 6 8 6 6 6 3 0 3 10 9 9 9 3 0 3 0 3 8 8 3 0 3 8 8 8 8 10 11 11 8 6 9 9 7 7 6 6 6 8 6 8 8 8 6 6 6 8 9 9 10 8 8 9 6 8 6 6 6 6 6 10 10 11 8 8 7 6 6 6 6 6 6 6 8 8 6 6 6 6 10 10 9 6 6 6 6 6 6 9 9 9 9 9 10 10 12 14 10 8 8 8 8 9 10 10 10 8 8 8 8 8 8 8 8 10 9 9 9 9 9 9 9 9 10 11 11 12 10 8 7 6 6 6 6 6 6 21 12 14 9 10 8 8 8 8 8 8 8 8 8 7 7 7 7 7 14 11 9 7 7 7 7 8 8 8 7 7 8 9 10 11 11 12 14 8 7 6 6 6 8 6 6 6 6 6 6 7 8 12 8 8 8 8 6 6 6 6 6 6 6 6 6 8 8 8 10 10 9 9 9 9 9 9 9 9 8 8 8 10 10 9 10 9 6 6 6 6 6 6 6 10 13 15 14 13 13 16 16 8 6 6 6 8 8 7 7 7 8 8 8 8 6 6 6 6 6 6 6 6 6 7 7 7 10 8 6 6 6 6 8 8 6 6 8 6 6 6 7 6 6 8 8 8 8 6 6 8 10 10 9 9 9 9 9 6 6 6 6 6 6 8 6 7 6 6 6 8 10 6 6 6 6 6 6 6 8 8 10 10 9 9 10 9 6 7 6 6 6 8 10 8 8 6 6 7 7 6 6 6 6 6 8 8 8 8 8 8 8 6 10 6 6 6 6 7 10 10 8 6 6 6 6 6 6 6 9 10 11 13 12 11 9 7 6 6 7 6 6 6 3 0 3 6 6 7 6 6 11 3 0 3 11 10 10 8 8 8 8 8 10 12 12 9 8 8 8 8 8 9 11 12 11 11 10 10 9 10 10 10 10 10

Alignment Information

BAC End 1	BAC End 2
Query= MSMg01no451_h24.b1 MSMg01no451_h24.b1 CHROMAT_FILE: MSMg01no451_h24.b1 PHD_FILE: MSMg01no451_h24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:21:46 2005 (179 letters) >mm_chr1_88722169_88722748 Length = 580 Score = 317 bits (164), Expect = 2e-91 Identities = 173/178 (97%), Gaps = 5/178 (2%) Strand = Plus / Plus Query: 5 gaattctgagaat---tctattatgtaatcccaatgtgttattgtttttgaaatatacta 61 \|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| Sbjct: 205 gaattctgagaataaat--attatgtaatcccaatgtgttattgtttttgaaatatacta 262 Query: 62 taaggttcatttaggcactgtatagtacaatttttatttcatgttaaatagatacaagat 121 \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| Sbjct: 263 taaggttcatttaggcactgtatagtacaatttttatttcatgttaaatagatacaagat 322 Query: 122 tttttaccattttatttagtatttagagtcaagattataatagctccatagaatgacc 179 \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| Sbjct: 323 tttttaccattttatttagtatttagagtcaagattataatagctccatagaatgacc 380 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.34 0.600 1.10 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 2, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 7 Number of extensions: 1 Number of successful extensions: 1 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 179 Length of database: 580 Length adjustment: 8 Effective length of query: 171 Effective length of database: 572 Effective search space: 97812 Effective search space used: 97812 X1: 7 (13.9 bits) X2: 517 (999.5 bits) X3: 517 (999.5 bits) S1: 7 (14.4 bits) S2: 7 (14.3 bits)

BAC End 1

BAC End 2

Query= MSMg01no451_h24.b1 MSMg01no451_h24.b1 CHROMAT_FILE:
MSMg01no451_h24.b1 PHD_FILE: MSMg01no451_h24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:46 2005
         (179 letters)



>mm_chr1_88722169_88722748
          Length = 580

 Score =  317 bits (164), Expect = 2e-91
 Identities = 173/178 (97%), Gaps = 5/178 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgagaat---tctattatgtaatcccaatgtgttattgtttttgaaatatacta 61
           |||||||||||||   |  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgagaataaat--attatgtaatcccaatgtgttattgtttttgaaatatacta 262

                                                                       
Query: 62  taaggttcatttaggcactgtatagtacaatttttatttcatgttaaatagatacaagat 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 taaggttcatttaggcactgtatagtacaatttttatttcatgttaaatagatacaagat 322

                                                                     
Query: 122 tttttaccattttatttagtatttagagtcaagattataatagctccatagaatgacc 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tttttaccattttatttagtatttagagtcaagattataatagctccatagaatgacc 380


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 179
Length of database: 580
Length adjustment: 8
Effective length of query: 171
Effective length of database: 572
Effective search space:    97812
Effective search space used:    97812
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

BAC Information

Search Parameter

Search Result

BAC

no map image available.

BAC End Information

Alignment Information