Query= MSMg01no451_i22.b1 MSMg01no451_i22.b1 CHROMAT_FILE:
MSMg01no451_i22.b1 PHD_FILE: MSMg01no451_i22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:51 2005
(709 letters)
>mm_chr1_76246814_76247926
Length = 1113
Score = 1268 bits (656), Expect = 0.0
Identities = 694/708 (98%), Gaps = 4/708 (0%)
Strand = Plus / Plus
Query: 5 gaattcagtctacttatcccttgtgtcctgtaaatccctc--tgtttaacctgtgcagga 62
||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 205 gaattcagtctgcagatcccttgtgtcctgtaaatccctctgtgtttaacctgtgcagga 264
Query: 63 ggaagccatttaggcataaggtcagagttagcctctcagtactgaaggtcagagccatat 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggaagccatttaggcataaggtcagagttagcctctcagtactgaaggtcagagccatat 324
Query: 123 agtgagtggatgacggacagtgtctgaaatttcctgactgctgtctccaacagtctgtcc 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agtgagtggatgacggacagtgtctgaaatttcctgactgctgtctccaacagtctgtcc 384
Query: 183 ttgctcgtgttctgttatggctgatgaactgacattaacttctcttcgtagggg--gaaa 240
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct: 385 ttgctcgtgttctgttatggctgatgaactgacattaacttctcttcttaggggaaaaaa 444
Query: 241 aattgtcattttccgtcttactaaaatgtcatcttccttctgtgttttcttatagctgtg 300
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aattgtcattttctgtcttactaaaatgtcatcttccttctgtgttttcttatagctgtg 504
Query: 301 tgggaatgtgactgtggaaagcactacaattgattataaagttatatctggtctagctca 360
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 505 tgggaatgtgactgtggaaagcactataattgattataaagttatatctggtctagctca 564
Query: 361 gggcacttagcagttacagcgcagggcaaggatgctaggttgtagttacaggctcataac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gggcacttagcagttacagcgcagggcaaggatgctaggttgtagttacaggctcataac 624
Query: 421 cagcaacctgtgcctttcgtgacagcagggcttcattgtttcctctaacagcgaccttta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cagcaacctgtgcctttcgtgacagcagggcttcattgtttcctctaacagcgaccttta 684
Query: 481 tcaaatgagtagcactaaaattgatgtcaaggagccaatcctaaaagcaaaatgcaatgc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tcaaatgagtagcactaaaattgatgtcaaggagccaatcctaaaagcaaaatgcaatgc 744
Query: 541 attcgttctccagagtggcatacataccgtgataggaagtaagcttgttgttacctccta 600
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 745 attcgttctccagagtggcatatataccgtgataggaagtaagcttgttgttacctccta 804
Query: 601 tctcctcttcgaggctataatatccagcacatctaagggaaagggaagcctaacaactct 660
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tctcctcttcaaggctataatatccagcacatctaagggaaagggaagcctaacaactct 864
Query: 661 gttcaatgtaaagtcctgtgccattttcatgactgtgcatagatctta 708
|||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 865 gttcaatgtaaagtcctgcgccattttcatgactgtgcatagatctta 912
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 709
Length of database: 1113
Length adjustment: 10
Effective length of query: 699
Effective length of database: 1103
Effective search space: 770997
Effective search space used: 770997
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no451_i22.g1 MSMg01no451_i22.g1 CHROMAT_FILE:
MSMg01no451_i22.g1 PHD_FILE: MSMg01no451_i22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:51 2005
(628 letters)
>mm_chr1_76426286_76427317
Length = 1032
Score = 1203 bits (622), Expect = 0.0
Identities = 628/632 (99%), Gaps = 4/632 (0%)
Strand = Plus / Minus
Query: 1 ccaaaatgcactgcttccctccatttcacgttccttgaaatagcagatttgtatggccgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 832 ccaaaatgcactgcttccctccatttcacgttccttgaaatagcagatttgtatggccgc 773
Query: 61 tggaaagaagagtgattcccatgtcatccttccagaatacgatttatttgccaaaaagaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 tggaaagaagagtgattcccatgtcatccttccagaatacgatttatttgccaaaaagaa 713
Query: 121 aaacaaggggttgggggaagagagagagactaaattgtctttgatcagtgggaattagtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 aaacaaggggttgggggaagagagagagactaaattgtctttgatcagtgggaattagtt 653
Query: 181 acaaatgctcaataaaaataaaagctggattgaactcttaatatgtttaggacttggatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 acaaatgctcaataaaaataaaagctggattgaactcttaatatgtttaggacttggatg 593
Query: 241 atgcaatcacccgaatttagaatttacaaggttgctttgttcggctccttcagctcagtt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 atgcaatcacccgaatttagaatttacaaggttgctttgttcggctccttcagctcagtt 533
Query: 301 cccatgtaatgtttgctctgggggcaaaaacatgaggcatctggatggaatctattctgg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 cccatgtaatgtttgctctgggggcaaaaacatgaggcatctggatggaatctattctgg 473
Query: 361 cttcaggaagacagaaatgcctaccctataggaaaactgtccatctttaaattaaattca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 cttcaggaagacagaaatgcctaccctataggaaaactgtccatctttaaattaaattca 413
Query: 421 attctaagcagcttgcaccctaaccaaagcctgcttctccatatctttctaaactgtatg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 attctaagcagcttgcaccctaaccaaagcctgcttctccatatctttctaaactgtatg 353
Query: 481 atttaaatcatctgtgtggtgattctt----ccccccctatttttcctgatctttttgga 536
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 352 atttaaatcatctgtgtggtgattcttccccccccccctatttttcctgatctttttgga 293
Query: 537 ataaatgtggtgcttgttaacatgaggaattgatagtctgttgccattttccatggtctt 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 ataaatgtggtgcttgttaacatgaggaattgatagtctgttgccattttccatggtctt 233
Query: 597 gacatttgaggacatttgtaatcaataaaggc 628
||||||||||||||||||||||||||||||||
Sbjct: 232 gacatttgaggacatttgtaatcaataaaggc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1032
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1022
Effective search space: 631596
Effective search space used: 631596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
