Query= MSMg01no451_p10.b1 MSMg01no451_p10.b1 CHROMAT_FILE:
MSMg01no451_p10.b1 PHD_FILE: MSMg01no451_p10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:23 2005
(679 letters)
>mm_chr1_185602645_185603723
Length = 1079
Score = 1216 bits (629), Expect = 0.0
Identities = 665/677 (98%), Gaps = 2/677 (0%)
Strand = Plus / Plus
Query: 4 ggaattcatccttaccactttcttctataactagtacctcaccggactattaattttctg 63
||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcatccagagcactttcttctataactagtacctcaccggactattaattttctg 263
Query: 64 taaaccaggaaatgtcctggcactgtgttcatgccattgagtgatgagttatcatgcagc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 taaaccaggaaatgtcctggcactgtgttcatgccattgagtgatgagttatcatgcagc 323
Query: 124 tgaccctcatggttcatggatttggtatttgcaaactcac-ttccttgctaaattatgag 182
||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||
Sbjct: 324 tgaccctcatggttcatagatttggtatttgcaaactcaccttc-ttgctaaattatgag 382
Query: 183 ttgctctgagaatcaacactcactgctttgcagggtggcaacattcgagccatggagttg 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ttgctctgagaatcaacactcactgctttgcagggtggcaacattcgagccatggagttg 442
Query: 243 caaattcccaggcatctaacatggagataccgtttttcacttcagctttctgtgaatcgc 302
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 443 caaattcccaggcatctaacatggagataccgtttttcacttcagctttctgtgaatcac 502
Query: 303 ttaggatctttctctttttccccattttgtatttgtgggctttctgttggtgagtttgtt 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ttaggatctttctctttttccccattttgtatttgtgggctttctgttggtgagtttgtt 562
Query: 363 gttaaaacagggcccaggtgtcatgtggatgtgctaataaaagtggacagcgtgggcctc 422
||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 563 gttaaaacagggcccgggtgtcatgtggatgtgctaataaaagtggatagcgtgggtctc 622
Query: 423 atggagaaaatgtgaacggagataagctgtgctcagacatgagttactgcacatttggcc 482
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 623 atggagaaaatgtgaacggagataagctgtgctcagacatgaattactgcacatttggcc 682
Query: 483 ttgagctccatgcttatgaatcgacagcgtacattaagcaggatgtctctaagcagaaac 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 ttgagctccatgcttatgaatcgacagcgtacattaagcaggatgtctctaagcagaaac 742
Query: 543 acacattaaataaggttgtgtattgatctgttggtgaaattattgttgccaaagaaccat 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 acacattaaataaggttgtgtattgatctgttggtgaaattattgttgccaaagaaccat 802
Query: 603 agcaagctgctctgcatttctcccatagcaatggctcagaattcatgaattcagtttctc 662
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 803 agcaagctgctctgcatttctcccatagcaatggctcagaattcatgaattcagtttccc 862
Query: 663 tggtaatttcctagaac 679
|||||||||||||||||
Sbjct: 863 tggtaatttcctagaac 879
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1079
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1069
Effective search space: 715161
Effective search space used: 715161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no451_p10.g1 MSMg01no451_p10.g1 CHROMAT_FILE:
MSMg01no451_p10.g1 PHD_FILE: MSMg01no451_p10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:23 2005
(482 letters)
>mm_chr1_185786209_185787088
Length = 880
Score = 861 bits (445), Expect = 0.0
Identities = 473/483 (97%), Gaps = 4/483 (0%)
Strand = Plus / Minus
Query: 1 atatctgaaaaccatgctggtattgatggtgttgagccttgaatgtagcaggtggtgctg 60
||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 680 atatctgaaaaccatgctggtat--a-ggtgttgagccttgaatgtagcaggtggtgctg 624
Query: 61 gtgaaaccatgcatgaactcttctctagatatctgggatctacaaagaatgagacctaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 gtgaaaccatgcatgaactcttctctagatatctgggatctacaaagaatgagacctaga 564
Query: 121 tagactagagcttcctcaggatgtccttattaacaagagactgagagcatcaagtccaac 180
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tagactggagcttcctcaggatgtccttattaacaagagactgagagcatcaagtccaac 504
Query: 181 ctgggtggccagacaatcatcttactttaaatcaccatttggccccaagcaaacacacca 240
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 503 ctgggtggccagacaatcatcttactttaaatcaccatttgtccccaagcaaacacacca 444
Query: 241 ttagagctcatctaaacctgtagacattcactctggcagggcactgagtgcagcagctgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gcagagctcatctaaacctgtagacattcactctggcagggcactgagtgcagcagctgg 384
Query: 301 tgtcgctgcaatggagacagcctccacgatgcagctagggcttctgatctcattctagga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tgtcgctgcaatggagacagcctccacgatgcagctagggcttctgatctcattctagga 324
Query: 361 agttcttttaggtgactt-aaactggagtcatcttgctttcctggtagtctgctgttcct 419
|||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||
Sbjct: 323 agttcttttaggtgacttaaaagtggagtcatcttgctttcctggtagtctgctgttact 264
Query: 420 ttgtttgccttacctctgggcaaacctgtagcccttgttatttctaccactctactgaca 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ttgtttgccttacctctgggcaaacctgtagcccttgttatttctaccactctactgaca 204
Query: 480 gta 482
|||
Sbjct: 203 gta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 880
Length adjustment: 10
Effective length of query: 472
Effective length of database: 870
Effective search space: 410640
Effective search space used: 410640
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
