Query= MSMg01no451_p24.b1 MSMg01no451_p24.b1 CHROMAT_FILE:
MSMg01no451_p24.b1 PHD_FILE: MSMg01no451_p24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:26 2005
(208 letters)
>mm_chr1_121133545_121134152
Length = 608
Score = 360 bits (186), Expect = e-104
Identities = 201/206 (97%), Gaps = 2/206 (0%)
Strand = Plus / Minus
Query: 4 ggaattcattcaatttc-gtaactgagcgattcatccagctcaaatttccattttttaaa 62
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 408 ggaattcattcaa-ttcagtaactgagcgattcatccagctcaaatttccatttttttaa 350
Query: 63 aagccgtccattttgcagaagttggttacagcacagaatatgaatcctacaaccagataa 122
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 349 aagccgtccattttgcagaagttggttacagcacagattatgaatcctacaaccagataa 290
Query: 123 acgaggagtgtggactggcagggaagccccccgtgaaatgtggcaggcagttcctggtcc 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 acgaggagtgtggactggcagggaagccccccgtgaaatgtggcaggcagttcctggtcc 230
Query: 183 ataaacatcaacagggtacttctgca 208
|||||| |||||||||||||||||||
Sbjct: 229 ataaacgtcaacagggtacttctgca 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 208
Length of database: 608
Length adjustment: 9
Effective length of query: 199
Effective length of database: 599
Effective search space: 119201
Effective search space used: 119201
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no451_p24.g1 MSMg01no451_p24.g1 CHROMAT_FILE:
MSMg01no451_p24.g1 PHD_FILE: MSMg01no451_p24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:26 2005
(404 letters)
>mm_chr1_120972630_120973433
Length = 804
Score = 683 bits (353), Expect = 0.0
Identities = 392/405 (96%), Gaps = 2/405 (0%)
Strand = Plus / Plus
Query: 1 aaaagatggtaggtgggggagctgaggtctccgcataacaaaaccttggcttttaaggac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaagatggtaggtgggggagctgaggtctccgcataacaaaaccttggcttttaaggac 260
Query: 61 caacactggggtattttctaaccttacttattcattccttactacagcccttcctacagt 120
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 261 caacactggggtattttctaacctcacttattcattccttactacagcccttcctacagt 320
Query: 121 gttttgtcttgctta-tttcttaaacttaaaatttgtaatatctatctatctatctatct 179
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttttgtcttgcttagttt-ttaaacttaaaatttgtaatatctatctatctatctatct 379
Query: 180 atctatctacctatctacctatctatttacttattgtgtggtttgacgcatgccatgatg 239
||||||||| ||||||| |||||||| ||||||||||||||||||| ||||||||||| |
Sbjct: 380 atctatctatctatctatctatctatctacttattgtgtggtttgatgcatgccatgacg 439
Query: 240 catgcgcagaggtcaaaagacaacttgtgggatctggttctttccaccccgtgaatttca 299
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 440 catgcgcagaggtcaaaagacaacttgtgggatctggttctctccaccccgtgaatttca 499
Query: 300 tgaatcaaactcaggttgccagccttggcagcaagccccttcccctctgaaccatcttgc 359
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 500 caaatcaaactcaggttgccagccttggcagcaagccccttcccctctgacccatcttgc 559
Query: 360 ccaccatctttgtttttaagctatgatcacgtgtagttcaagcag 404
||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 560 ccaccatctttgtttttaagctaggatcacgtgtagttcaagcag 604
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 404
Length of database: 804
Length adjustment: 9
Effective length of query: 395
Effective length of database: 795
Effective search space: 314025
Effective search space used: 314025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
