This page provides previous versions of nucleotide polymorphisms of MSM/Ms and JF1/Ms strains, corresponding to GRCm38 coordinate by Liftover from GRCm37.
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RIKEN MSM/Ms Mouse BAC clones & Library
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Search Result
BAC
Clone Name
MSMg01-452A09
Chromosome
1 (Build37)
Map Location
177,337,234 - 177,337,742
singlet/doublet
singlet
Overlap gene
Rgs7
Upstream gene
Olfr414
,
Olfr220
,
Fmn2
,
Grem2
Downstream gene
Fh1
,
Kmo
,
Opn3
,
Chml
,
Wdr64
,
Exo1
,
Gm104
,
Pld5
,
B020018G12Rik
Link
Open Mouse BAC browser
Click to get alignment info.
name
Olfr414
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:258756
MGI:3030248
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Olfr220
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:546747
MGI:3030054
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 747 Proteins
name
Fmn2
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:54418
MGI:1859252
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Grem2
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:23893
MGI:1344367
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Rgs7
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:24012
MGI:1346089
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Fh1
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:14194
MGI:95530
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Kmo
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:98256
MGI:2138151
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Opn3
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:13603
MGI:1338022
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Chml
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:12663
MGI:101913
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Wdr64
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:75820
MGI:1923070
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs, 2 Proteins
name
Exo1
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:26909
MGI:1349427
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Gm104
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:226720
MGI:2684950
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 16 ESTs, 3 Proteins
name
Pld5
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:319455
MGI:2442056
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
B020018G12Rik
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:545388
MGI:3612447
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Olfr414
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:22129328
GeneID:258756
MGI:3030248
definition
exception
: mismatches in transcription
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: olfactory receptor 414
transcript_id
: NM_146761.1
name
Olfr220
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:149245364
GeneID:546747
MGI:3030054
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 747 Proteins
product
: olfactory receptor 220
transcript_id
: XM_001474930.1
name
Fmn2
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:9506700
GeneID:54418
MGI:1859252
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: formin 2
transcript_id
: NM_019445.1
name
Grem2
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:6754069
GeneID:23893
MGI:1344367
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: gremlin 2 homolog, cysteine knot superfamily (Xenopus laevis)
transcript_id
: NM_011825.1
name
Rgs7
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:141801672
GeneID:24012
MGI:1346089
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: regulator of G protein signaling 7
transcript_id
: NM_011880.2
name
Fh1
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:33859553
GeneID:14194
MGI:95530
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: fumarate hydratase 1
transcript_id
: NM_010209.1
name
Kmo
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:19527029
GeneID:98256
MGI:2138151
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: kynurenine 3-monooxygenase (kynurenine 3-hydroxylase)
transcript_id
: NM_133809.1
name
Opn3
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:118129915
GeneID:13603
MGI:1338022
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: opsin (encephalopsin)
transcript_id
: NM_010098.2
name
Chml
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:10946669
GeneID:12663
MGI:101913
definition
exception
: mismatches in transcription
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: choroideremia-like
transcript_id
: NM_021350.1
name
Wdr64
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:149245372
GeneID:75820
MGI:1923070
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs, 2 Proteins
product
: WD repeat domain 64
transcript_id
: XM_001474997.1
name
Exo1
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:141801186
GeneID:26909
MGI:1349427
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: exonuclease 1
transcript_id
: NM_012012.3
name
Gm104
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:94364532
GeneID:226720
MGI:2684950
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 16 ESTs, 3 Proteins
product
: gene model 104, (NCBI)
transcript_id
: XM_129608.4
name
Pld5
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:119943137
GeneID:319455
MGI:2442056
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: phospholipase D family, member 5
transcript_id
: NM_176916.4
name
B020018G12Rik
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:91064864
GeneID:545388
MGI:3612447
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: RIKEN cDNA B020018G12 gene
transcript_id
: NM_001039518.1
name
Olfr414
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:22129329
CCDS:CCDS15544.1
GeneID:258756
MGI:3030248
definition
GO_component
: GO:0016021 - integral to membrane [Evidence IEA] [Evidence ISS]; GO:0016020 - membrane [Evidence IEA]
GO_function
: GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0004984 - olfactory receptor activity [Evidence IEA] [Evidence ISS]; GO:0004872 - receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA]
GO_process
: GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence ISS] [Evidence IEA]; GO:0050896 - response to stimulus [Evidence IEA]; GO:0007608 - sensory perception of smell [Evidence IEA] [Evidence ISS]; GO:0007165 - signal transduction [Evidence IEA]
codon_start
: 1
exception
: mismatches in translation
note
: GA_x6K02T2P20D-20749615-20748662; olfactory receptor MOR103-10
product
: olfactory receptor 414
protein_id
: NP_666972.1
name
Olfr220
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:149245365
GeneID:546747
MGI:3030054
definition
codon_start
: 1
product
: olfactory receptor 220
protein_id
: XP_001474980.1
name
Fmn2
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:9506701
GeneID:54418
MGI:1859252
definition
GO_component
: GO:0015629 - actin cytoskeleton [Evidence IEA]
GO_function
: GO:0003779 - actin binding [Evidence IEA]
GO_process
: GO:0030036 - actin cytoskeleton organization and biogenesis [Evidence IEA]; GO:0016043 - cell organization and biogenesis [Evidence IEA]; GO:0007275 - development [Evidence IEA]
codon_start
: 1
exception
: mismatches in translation
product
: formin 2
protein_id
: NP_062318.1
name
Grem2
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:6754070
CCDS:CCDS15545.1
GeneID:23893
MGI:1344367
definition
GO_function
: GO:0005125 - cytokine activity [Evidence IEA]
codon_start
: 1
note
: Gremlin1; protein related to DAN and cerberus
product
: gremlin 2 homolog, cysteine knot superfamily
protein_id
: NP_035955.1
name
Rgs7
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:6755318
CCDS:CCDS15546.1
GeneID:24012
MGI:1346089
definition
GO_component
: GO:0005834 - heterotrimeric G-protein complex [Evidence IEA]
GO_function
: GO:0005096 - GTPase activator activity [Evidence TAS]; GO:0004871 - signal transducer activity [Evidence IEA]
GO_process
: GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence TAS]; GO:0007242 - intracellular signaling cascade [Evidence IEA]; GO:0009968 - negative regulation of signal transduction [Evidence IEA]
codon_start
: 1
exception
: mismatches in translation
note
: regulator of G-protein signaling 7
product
: regulator of G protein signaling 7
protein_id
: NP_036010.1
name
Fh1
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:33859554
CCDS:CCDS15547.1
GeneID:14194
MGI:95530
definition
GO_component
: GO:0005739 - mitochondrion [Evidence IDA]; GO:0045239 - tricarboxylic acid cycle enzyme complex [Evidence IEA]
GO_function
: GO:0003824 - catalytic activity [Evidence IEA]; GO:0004333 - fumarate hydratase activity [Evidence IEA]; GO:0016829 - lyase activity [Evidence IEA]
GO_process
: GO:0006106 - fumarate metabolism [Evidence IEA]; GO:0006099 - tricarboxylic acid cycle [Evidence IEA]
codon_start
: 1
exception
: mismatches in translation
product
: fumarate hydratase 1
protein_id
: NP_034339.1
name
Kmo
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:19527030
CCDS:CCDS15548.1
GeneID:98256
MGI:2138151
definition
GO_component
: GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005743 - mitochondrial inner membrane [Evidence IDA]; GO:0005739 - mitochondrion [Evidence IDA]
GO_function
: GO:0004502 - kynurenine 3-monooxygenase activity [Evidence IEA]
codon_start
: 1
note
: kynurenine 3-hydroxylase
product
: kynurenine 3-monooxygenase
protein_id
: NP_598570.1
name
Opn3
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:6753710
CCDS:CCDS15549.1
GeneID:13603
MGI:1338022
definition
GO_component
: GO:0016021 - integral to membrane [Evidence ISS]; GO:0016020 - membrane [Evidence IEA]
GO_function
: GO:0008020 - G-protein coupled photoreceptor activity [Evidence ISS]; GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0001584 - rhodopsin-like receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA]
GO_process
: GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA]; GO:0007602 - phototransduction [Evidence IEA] [Evidence ISS]; GO:0018298 - protein-chromophore linkage [Evidence IEA]; GO:0042752 - regulation of circadian rhythm [Evidence ISS]; GO:0050896 - response to stimulus [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA]; GO:0007601 - visual perception [Evidence IEA]
codon_start
: 1
note
: encephalopsin
product
: opsin (encephalopsin)
protein_id
: NP_034228.1
name
Chml
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:10946670
GeneID:12663
MGI:101913
definition
GO_component
: GO:0005968 - Rab-protein geranylgeranyltransferase complex [Evidence IEA]
GO_function
: GO:0005096 - GTPase activator activity [Evidence IEA]; GO:0005084 - Rab escort protein activity [Evidence IEA]; GO:0004663 - Rab-protein geranylgeranyltransferase activity [Evidence IEA]
GO_process
: GO:0006886 - intracellular protein transport [Evidence IEA]; GO:0043087 - regulation of GTPase activity [Evidence IEA]
codon_start
: 1
exception
: mismatches in translation
note
: rab escort protein-2
product
: choroideremia-like
protein_id
: NP_067325.1
name
Wdr64
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:149245373
GeneID:75820
MGI:1923070
definition
codon_start
: 1
product
: WD repeat domain 64
protein_id
: XP_001475047.1
name
Exo1
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:31560511
CCDS:CCDS15551.1
GeneID:26909
MGI:1349427
definition
GO_component
: GO:0005634 - nucleus [Evidence ISS] [Evidence IEA]
GO_function
: GO:0008409 - 5'-3' exonuclease activity [Evidence ISS]; GO:0004519 - endonuclease activity [Evidence IEA]; GO:0004527 - exonuclease activity [Evidence IEA]; GO:0048256 - flap endonuclease activity [Evidence ISS]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0045145 - single-stranded DNA specific 5'-3' exodeoxyribonuclease activity [Evidence ISS]
GO_process
: GO:0006284 - base-excision repair [Evidence IEA]; GO:0006310 - DNA recombination [Evidence ISS]; GO:0006281 - DNA repair [Evidence IEA]; GO:0006955 - immune response [Evidence IEA]; GO:0007126 - meiosis [Evidence IEA]; GO:0006298 - mismatch repair [Evidence ISS]; GO:0006139 - nucleobase, nucleoside, nucleotide and nucleic acid metabolism [Evidence ISS]; GO:0006289 - nucleotide-excision repair [Evidence IEA]; GO:0006974 - response to DNA damage stimulus [Evidence IEA]
codon_start
: 1
product
: exonuclease 1
protein_id
: NP_036142.2
name
Gm104
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:38073584
GeneID:226720
MGI:2684950
definition
codon_start
: 1
product
: similar to hCG1642696
protein_id
: XP_129608.2
name
Pld5
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:83627695
CCDS:CCDS15552.1
GeneID:319455
MGI:2442056
definition
GO_function
: GO:0003824 - catalytic activity [Evidence IEA]
GO_process
: GO:0008152 - metabolism [Evidence IEA]
codon_start
: 1
product
: phospholipase D family, member 5
protein_id
: NP_795890.2
name
B020018G12Rik
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:91064865
GeneID:545388
MGI:3612447
definition
GO_function
: GO:0003723 - RNA binding [Evidence IEA]
codon_start
: 1
note
: RNA-binding protein 8A-like
product
: hypothetical protein LOC545388
protein_id
: NP_001034607.1
name
(CDS detail)
type
STS
link
xref
UniSTS:489429
definition
name
(CDS detail)
type
STS
link
xref
UniSTS:142270
definition
standard_name
: D1Sta13
name
(CDS detail)
type
STS
link
xref
UniSTS:128910
definition
standard_name
: D1Mit541
name
(CDS detail)
type
STS
link
xref
UniSTS:178207
definition
standard_name
: G67086
name
(CDS detail)
type
STS
link
xref
UniSTS:128488
definition
standard_name
: D1Mit150
name
(CDS detail)
type
STS
link
xref
UniSTS:142271
definition
standard_name
: D1Sta14
name
(CDS detail)
type
STS
link
xref
UniSTS:207255
definition
standard_name
: C85956
name
(CDS detail)
type
STS
link
xref
UniSTS:164921
definition
standard_name
: Fmn2
name
(CDS detail)
type
STS
link
xref
UniSTS:158893
definition
standard_name
: AU024104
name
(CDS detail)
type
STS
link
xref
UniSTS:128827
definition
standard_name
: D1Mit457
name
(CDS detail)
type
STS
link
xref
UniSTS:214642
definition
standard_name
: RH131359
name
(CDS detail)
type
STS
link
xref
UniSTS:233944
definition
standard_name
: Rgs7
name
(CDS detail)
type
STS
link
xref
UniSTS:128716
definition
standard_name
: D1Mit357
name
(CDS detail)
type
STS
link
xref
UniSTS:128765
definition
standard_name
: D1Mit403
name
(CDS detail)
type
STS
link
xref
UniSTS:158895
definition
standard_name
: AI046660
name
(CDS detail)
type
STS
link
xref
UniSTS:158896
definition
standard_name
: AI450814
name
(CDS detail)
type
STS
link
xref
UniSTS:128620
definition
standard_name
: D1Mit271
name
(CDS detail)
type
STS
link
xref
UniSTS:163272
definition
standard_name
: AJ238213
name
(CDS detail)
type
STS
link
xref
UniSTS:162295
definition
standard_name
: RH125476
name
(CDS detail)
type
STS
link
xref
UniSTS:479236
definition
standard_name
: Rbm8a
name
(CDS detail)
type
STS
link
xref
UniSTS:178525
definition
standard_name
: AA673428
clone name
MSMg01-260D16
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-477I13
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-342N04
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-499E02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-496B12
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-366L04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-336L21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-519J14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-395P24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-276H14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-501B15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-531I12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-492H15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-362P24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-341E08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-319I15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-528E02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-526K21
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