BAC Information

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BAC

Clone NameMSMg01-452B20
Chromosome1 (Build37)
Map Location 67,472,907 - 67,607,483
singlet/doubletdoublet
Overlap genenone
Upstream geneMtap2, C030018G13Rik, Rpe, 1110028C15Rik, Acadl, Myl1, LOC100043192, Lancl1, Cps1
Downstream geneKif22-ps, Erbb4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-452B20.T7 (MSMg01no452_b20.b1)MSMg01-452B20.TJ (MSMg01no452_b20.g1)
ACCAG539444AG539445
length760763
length of high quality
(start - end)		658 (44 - 701)675 (75 - 749)
definitionCHROMAT_FILE: MSMg01no452_b20.b1 PHD_FILE: MSMg01no452_b20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:22:35 2005CHROMAT_FILE: MSMg01no452_b20.g1 PHD_FILE: MSMg01no452_b20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:22:35 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,472,907 - 67,473,559)(67,606,809 - 67,607,483)
sequence
ATCTATATTTGCGGCCGCTATAGACTTCCTATATCCAGAGAATCCGCGGA
ATTCTCTGTATTCCCTCTTGCATGATGTTCTGTAGCCTTGGAAGGAGTGA
TGTAGATGTCTCCATTAGTAATGAGCACTTAAGACCTACTTATTCTCACC
ACTTTAATCAGTTGTAAAACTCCATAATATCTGCTCATTGTTCACTGGCA
ATACTTTGACTAATAAAAATGAATATTTAGAAGCCAGTTTGGCCAATTAT
CTACTTAGCAAAACAATGGAAGTATAAGAATTGTCCCTTAGGCTATGGCA
TTTTCAAGCCATAAGTTTTTGGCCAGATTTATAGTACCCGTTATGTATTC
TTGTCCATGGAGTAGTCCTCAAAACCAGTCCAGAGCAGAACCTTTGTATA
AGCTGTTCTAACCCTATGGGTAGAAAAGTTAGAAATCATGGTGTCAAGCT
TATACAGATTTGTAAAACTATAGCTTCATACTTGTAGAATTAAATACTTT
TCTTTAGCAGGATTCTGACCCCTTTATTTCCTGTGAGAACATTTTTGTTT
ACTTTAAATCAGACATCTAGTAGTTTTCTATAGTTCCTGTAATGTCTCAA
ATCTTAAACTTGATCAAAGGAGCCTGTGTGGACTCTGGCATCAGAACTGA
GGCCACCTTTCCCTATGATGCAAACGTGTGTCTTTCCAACAGAATCTACC
AGAGAANACCAAAACCAACCAAAATGGGGAGTTGTGGAGCTTCATCCAAA
TGGAAGATTG

CCATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATGTCAGAAATTTCCTGTGTTTCCCA
TATGAGGTTACCCGTAGGTGACCTCCTGTTTCAGTGATAAGAGGTCTGGC
GATGGCATCTGCTTAATCTGACAAGAAGAGACTGGCATTAACACATAGCT
CTTCCAGACAAACAGCAGGAAGAGAATAGATTAATCAAATTTTCAACTTC
CCTATCAGTGACACAAGCATATCAGAAATGATAATACAGTCCTCAGAATA
CTTTAGATGCTTAATAAAGTGTAAATACCTTGTTAGTGATACAAGAATAC
AACTAGGGTATGGCTGTTCAAACACAGAGAAATACAGGTTGTACATTTAG
ACAAAGACTGATAAAGTAAGAGATATTTCTTTGTGAAAGAATTTTATACA
TCTAATAGTTAAATAGCACCAAGTTTTGCAGATTTTACTGGCCAGAGGAA
TAGTAACCTGGTTGTCTATTAATTCTGTTAGGTAATAGAAGAGAAAGGTT
GGGTTATTTTCCCAGCACTTCCTGTATGCAGCAGGCATAAGAAAAATCAT
TCTGGAATAACCACAAAATAGAATGCAATTGAGTGTTTCACAAATCCAGT
GTTAAAGTTGTCTTAAGCAAGATCTGAGGAGGAGCTTAGATAATGACCTT
AAACATCCAACATCTCTTAGAGAGCATGCAATGTCTACTCTTCTTGGAGC
AAANCTTGGAAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no452_b20.b1 MSMg01no452_b20.b1 CHROMAT_FILE:
MSMg01no452_b20.b1 PHD_FILE: MSMg01no452_b20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:35 2005
         (658 letters)



>mm_chr1_67472702_67473759
          Length = 1058

 Score = 1255 bits (649), Expect = 0.0
 Identities = 652/653 (99%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattctctgtattccctcttgcatgatgttctgtagccttggaaggagtgatgtagatg 65
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattctctgtatcccctcttgcatgatgttctgtagccttggaaggagtgatgtagatg 265

                                                                       
Query: 66  tctccattagtaatgagcacttaagacctacttattctcaccactttaatcagttgtaaa 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tctccattagtaatgagcacttaagacctacttattctcaccactttaatcagttgtaaa 325

                                                                       
Query: 126 actccataatatctgctcattgttcactggcaatactttgactaataaaaatgaatattt 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 actccataatatctgctcattgttcactggcaatactttgactaataaaaatgaatattt 385

                                                                       
Query: 186 agaagccagtttggccaattatctacttagcaaaacaatggaagtataagaattgtccct 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 agaagccagtttggccaattatctacttagcaaaacaatggaagtataagaattgtccct 445

                                                                       
Query: 246 taggctatggcattttcaagccataagtttttggccagatttatagtacccgttatgtat 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 taggctatggcattttcaagccataagtttttggccagatttatagtacccgttatgtat 505

                                                                       
Query: 306 tcttgtccatggagtagtcctcaaaaccagtccagagcagaacctttgtataagctgttc 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 tcttgtccatggagtagtcctcaaaaccagtccagagcagaacctttgtataagctgttc 565

                                                                       
Query: 366 taaccctatgggtagaaaagttagaaatcatggtgtcaagcttatacagatttgtaaaac 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 taaccctatgggtagaaaagttagaaatcatggtgtcaagcttatacagatttgtaaaac 625

                                                                       
Query: 426 tatagcttcatacttgtagaattaaatacttttctttagcaggattctgacccctttatt 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 tatagcttcatacttgtagaattaaatacttttctttagcaggattctgacccctttatt 685

                                                                       
Query: 486 tcctgtgagaacatttttgtttactttaaatcagacatctagtagttttctatagttcct 545
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 tcctgtgagaacatttttgtttactttaaatcagacatctagtagttttctatagttcct 745

                                                                       
Query: 546 gtaatgtctcaaatcttaaacttgatcaaaggagcctgtgtggactctggcatcagaact 605
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 gtaatgtctcaaatcttaaacttgatcaaaggagcctgtgtggactctggcatcagaact 805

                                                                
Query: 606 gaggccacctttccctatgatgcaaacgtgtgtctttccaacagaatctacca 658
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 gaggccacctttccctatgatgcaaacgtgtgtctttccaacagaatctacca 858


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1058
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1048
Effective search space:   679104
Effective search space used:   679104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no452_b20.g1 MSMg01no452_b20.g1 CHROMAT_FILE:
MSMg01no452_b20.g1 PHD_FILE: MSMg01no452_b20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:35 2005
         (675 letters)



>mm_chr1_67606609_67607683
          Length = 1075

 Score = 1297 bits (671), Expect = 0.0
 Identities = 674/675 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgtcagaaatttcctgtgtttcccatatgaggttacccgtaggtgacctcctgtttcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875 atgtcagaaatttcctgtgtttcccatatgaggttacccgtaggtgacctcctgtttcag 816

                                                                       
Query: 61  tgataagaggtctggcgatggcatctgcttaatctgacaagaagagactggcattaacac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 tgataagaggtctggcgatggcatctgcttaatctgacaagaagagactggcattaacac 756

                                                                       
Query: 121 atagctcttccagacaaacagcaggaagagaatagattaatcaaattttcaacttcccta 180
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 755 atagctcttccagacaaacagcaggaagagaatagatttatcaaattttcaacttcccta 696

                                                                       
Query: 181 tcagtgacacaagcatatcagaaatgataatacagtcctcagaatactttagatgcttaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 tcagtgacacaagcatatcagaaatgataatacagtcctcagaatactttagatgcttaa 636

                                                                       
Query: 241 taaagtgtaaataccttgttagtgatacaagaatacaactagggtatggctgttcaaaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 taaagtgtaaataccttgttagtgatacaagaatacaactagggtatggctgttcaaaca 576

                                                                       
Query: 301 cagagaaatacaggttgtacatttagacaaagactgataaagtaagagatatttctttgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 cagagaaatacaggttgtacatttagacaaagactgataaagtaagagatatttctttgt 516

                                                                       
Query: 361 gaaagaattttatacatctaatagttaaatagcaccaagttttgcagattttactggcca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 gaaagaattttatacatctaatagttaaatagcaccaagttttgcagattttactggcca 456

                                                                       
Query: 421 gaggaatagtaacctggttgtctattaattctgttaggtaatagaagagaaaggttgggt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 gaggaatagtaacctggttgtctattaattctgttaggtaatagaagagaaaggttgggt 396

                                                                       
Query: 481 tattttcccagcacttcctgtatgcagcaggcataagaaaaatcattctggaataaccac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tattttcccagcacttcctgtatgcagcaggcataagaaaaatcattctggaataaccac 336

                                                                       
Query: 541 aaaatagaatgcaattgagtgtttcacaaatccagtgttaaagttgtcttaagcaagatc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 aaaatagaatgcaattgagtgtttcacaaatccagtgttaaagttgtcttaagcaagatc 276

                                                                       
Query: 601 tgaggaggagcttagataatgaccttaaacatccaacatctcttagagagcatgcaatgt 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 tgaggaggagcttagataatgaccttaaacatccaacatctcttagagagcatgcaatgt 216

                          
Query: 661 ctactcttcttggag 675
           |||||||||||||||
Sbjct: 215 ctactcttcttggag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1075
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1065
Effective search space:   708225
Effective search space used:   708225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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