BAC Information

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BAC

Clone NameMSMg01-452D12
Chromosome1 (Build37)
Map Location 180,178,698 - 180,363,111
singlet/doubletdoublet
Overlap gene5830417C01Rik, LOC666284, 4930527J03Rik, LOC666295, B230369F24Rik, LOC669454, 2310005N03Rik, Hnrpu, Efcab2
Upstream geneAkt3, Zfp238, EG631449, LOC100040770, 1700016C15Rik, Adss, EG631584, EG545391, LOC666262
Downstream geneD230039L06Rik, Kif26b, Smyd3, LOC666354
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-452D12.T7 (MSMg01no452_d12.b1)MSMg01-452D12.TJ (MSMg01no452_d12.g1)
ACCAG539522AG539523
length761762
length of high quality
(start - end)		666 (50 - 715)647 (81 - 727)
definitionCHROMAT_FILE: MSMg01no452_d12.b1 PHD_FILE: MSMg01no452_d12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:22:43 2005CHROMAT_FILE: MSMg01no452_d12.g1 PHD_FILE: MSMg01no452_d12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:22:43 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(180,178,698 - 180,179,361)(180,362,487 - 180,363,111)
sequence
NAAACCCTTAAATTGCGGCGCTAATACGATCCTATTTCGAGAGGATGCGC
GGAATTCCAGCTTTTACCCACTTGTACCCCCTAGAGTCCTCAGGCCAAAG
GCTAGCTAGGCCTCCATGCCTTGTCCTGACCATAGTCCCTCTTCTGTCAG
GATATTATGGAGCTTGTCTTCATTTGTCGACTCTTCTTTCTGAACCATAT
GAGCTTCCTTGAAACAAATGGGTCATGGTTGAAAGCAAAGACAGAATGCA
GCTGAAGGGAAAGTGGGGTGGTAGAAATGGAAGAAAGTATGAAAGAACCT
GGGAAAAGAATTAACAAGAAGATACCAAAGACTGACTCTTCTAACAGCAT
GAGGCTTCTCTACTCTAATAACACCTGTACTAGCAAGCCTCTTTCCTTCT
GTTTGTTTAAAAGTAATTTTACATGTTTCAAAGTAGCTCAATGATCCAAG
ACAGACAGAAACCAAGGGGAATTGGCTTGACTTCACAAATGTAAAAAGTA
CATGGCTGAAAGAAAGGATTGGGGCTTGGTAGTGTCCGGCTCCTGAGTTA
AGGCACTGCTTCTCAGCAGACTGGAGTAGTCTGCTTCTCAGGGCAAGCTG
GTCTGCAGTATATTTTCTCTACAGCCACCTCCTCCTCCTCCCCCTCCATC
TCCCCCTCCCTTTAATAGTACCATCAGCATTGATCTCTTTTTCCTAATAC
AGAGCTCTGTCCTCCTTAGATTCTCTGTNGGAAGAGATTCCTCGCTGGAT
CAACCGGCTGG

NCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAGACAGCCATGGCTATAT
AGTGAAGCCTTGTCTCAAGGGAAAAAATTGAATTTCCACCATGGGTAGTG
GCACACATTCGTATCTCAATACTCAAAAAGGTGGAGTCAGGGAGATCAAG
AGTTCATAGTCCTCCTCAGCTAAACAGTGAGGGCTTATCTTTTTTTAAAA
AATAGCTTTAAATGACTTTATTTTTACTAAAAGTGTGGGGCATTTTCAGA
TACGAGTACAGGTGACCACAGAAGGCCTCTAATCTCCTGGAACTCAAGTT
ACAGGTGGTTAGGAACAATCTGATGTGGGTGCTGGAATTCAAACTTGGGT
CTTCTGAAAGAGCAGCAAATGCTCTTAATCACTGACCCATCTTTCTAGCC
CAGAAAATAAATTTCAAAAAATAAGTAAAAGGAATTGAATATTTTAGATA
TTGTAGCCATTTGGAAGGTTTTTTTAATTCAAGGTCAGTCTCAGCTACAC
TTTGAGACCCTGCCTCAATAGCTAAGGAGGGCTGGTAGGACAGCCCAGTG
GGTGAAGGTGCTTACCATGGAAGGCTGACAGCCTGAGTTCAGTCTCTGGA
ACCCATTTAATGGTGGAAGGAGAGAGAACTGACTCCCCAGAGCTATCTTC
TAGCCTCTATACATATACCACAGCACAACCTCAATAATAATTAGTAAAAA
TGACNAAAATAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no452_d12.b1 MSMg01no452_d12.b1 CHROMAT_FILE:
MSMg01no452_d12.b1 PHD_FILE: MSMg01no452_d12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:43 2005
         (666 letters)



>mm_chr1_180178496_180179561
          Length = 1066

 Score = 1253 bits (648), Expect = 0.0
 Identities = 660/664 (99%)
 Strand = Plus / Plus

                                                                       
Query: 3   gaattccagcttttacccacttgtaccccctagagtcctcaggccaaaggctagctaggc 62
           |||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattccagctggcacccacttgtaccccctagagtcctcaggccaaaggctagctaggc 262

                                                                       
Query: 63  ctccatgccttgtcctgaccatagtccctcttctgtcaggatattatggagcttgtcttc 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ctccatgccttgtcctgaccatagtccctcttctgtcaggatattatggagcttgtcttc 322

                                                                       
Query: 123 atttgtcgactcttctttctgaaccatatgagcttccttgaaacaaatgggtcatggttg 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 atttgtcgactcttctttctgaaccatatgagcttccttgaaacaaatgggtcatggttg 382

                                                                       
Query: 183 aaagcaaagacagaatgcagctgaagggaaagtggggtggtagaaatggaagaaagtatg 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 aaagcaaagacagaatgcagctgaagggaaagtggggtggtagaaatggaagaaagtatg 442

                                                                       
Query: 243 aaagaacctgggaaaagaattaacaagaagataccaaagactgactcttctaacagcatg 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 aaagaacctgggaaaagaattaacaagaagataccaaagactgactcttctaacagcatg 502

                                                                       
Query: 303 aggcttctctactctaataacacctgtactagcaagcctctttccttctgtttgtttaaa 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 aggcttctctactctaataacacctgtactagcaagcctctttccttctgtttgtttaaa 562

                                                                       
Query: 363 agtaattttacatgtttcaaagtagctcaatgatccaagacagacagaaaccaaggggaa 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 agtaattttacatgtttcaaagtagctcaatgatccaagacagacagaaaccaaggggaa 622

                                                                       
Query: 423 ttggcttgacttcacaaatgtaaaaagtacatggctgaaagaaaggattggggcttggta 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ttggcttgacttcacaaatgtaaaaagtacatggctgaaagaaaggattggggcttggta 682

                                                                       
Query: 483 gtgtccggctcctgagttaaggcactgcttctcagcagactggagtagtctgcttctcag 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 gtgtccggctcctgagttaaggcactgcttctcagcagactggagtagtctgcttctcag 742

                                                                       
Query: 543 ggcaagctggtctgcagtatattttctctacagccacctcctcctcctccccctccatct 602
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 743 ggcaagctggtctgcagtatattttctctacagccaccccctcctcctccccctccatct 802

                                                                       
Query: 603 ccccctccctttaatagtaccatcagcattgatctctttttcctaatacagagctctgtc 662
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 ccccctccctttaatagtaccatcagcattgatctctttttcctaatacagagctctgtc 862

               
Query: 663 ctcc 666
           ||||
Sbjct: 863 ctcc 866


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1066
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1056
Effective search space:   692736
Effective search space used:   692736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no452_d12.g1 MSMg01no452_d12.g1 CHROMAT_FILE:
MSMg01no452_d12.g1 PHD_FILE: MSMg01no452_d12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:43 2005
         (647 letters)



>mm_chr1_180362065_180363111
          Length = 1047

 Score = 1178 bits (609), Expect = 0.0
 Identities = 621/625 (99%)
 Strand = Plus / Minus

                                                                        
Query: 23   tgaagccttgtctcaagggaaaaaattgaatttccaccatgggtagtggcacacattcgt 82
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1047 tgaagccttgtctcaagggaaaaaattgaatttccaccatgggtagtggcacacattcgt 988

                                                                        
Query: 83   atctcaatactcaaaaaggtggagtcagggagatcaagagttcatagtcctcctcagcta 142
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 987  atctcaatactcaaaaaggtggagtcagggagatcaagagttcatagtcctcctcagcta 928

                                                                        
Query: 143  aacagtgagggcttatctttttttaaaaaatagctttaaatgactttatttttactaaaa 202
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 927  aacagtgagggcttatcttttttttaaaaatagctttaaatgactttatttttactaaaa 868

                                                                        
Query: 203  gtgtggggcattttcagatacgagtacaggtgaccacagaaggcctctaatctcctggaa 262
            ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct: 867  gtgtggggcattttcagatccgagtacaggtgaccacagaaggcctctaacctcctggaa 808

                                                                        
Query: 263  ctcaagttacaggtggttaggaacaatctgatgtgggtgctggaattcaaacttgggtct 322
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807  ctcaagttacaggtggttaggaacaatctgatgtgggtgctggaattcaaacttgggtct 748

                                                                        
Query: 323  tctgaaagagcagcaaatgctcttaatcactgacccatctttctagcccagaaaataaat 382
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 747  tctgaaagagcagcaaatgttcttaatcactgacccatctttctagcccagaaaataaat 688

                                                                        
Query: 383  ttcaaaaaataagtaaaaggaattgaatattttagatattgtagccatttggaaggtttt 442
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687  ttcaaaaaataagtaaaaggaattgaatattttagatattgtagccatttggaaggtttt 628

                                                                        
Query: 443  tttaattcaaggtcagtctcagctacactttgagaccctgcctcaatagctaaggagggc 502
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627  tttaattcaaggtcagtctcagctacactttgagaccctgcctcaatagctaaggagggc 568

                                                                        
Query: 503  tggtaggacagcccagtgggtgaaggtgcttaccatggaaggctgacagcctgagttcag 562
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567  tggtaggacagcccagtgggtgaaggtgcttaccatggaaggctgacagcctgagttcag 508

                                                                        
Query: 563  tctctggaacccatttaatggtggaaggagagagaactgactccccagagctatcttcta 622
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507  tctctggaacccatttaatggtggaaggagagagaactgactccccagagctatcttcta 448

                                     
Query: 623  gcctctatacatataccacagcaca 647
            |||||||||||||||||||||||||
Sbjct: 447  gcctctatacatataccacagcaca 423


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1047
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1037
Effective search space:   660569
Effective search space used:   660569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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