TTTTCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTGTACTAATTCCATGTGGCCATGGGCTTTTTTTTTTTTTTT
TTTTGGTTGGGAGACGTTTAATGAGTACTTCTATTTCTTTAGGGGTTAGG
GGACTATTTAGATAGTTTAAATGATCCTGATTTAACTTTGGTATCTGTCT
AGAAAAAATCCATTTCATCTAGATTTTCCAGTTTTGTAGAGTATAGGATT
TTGTAGTAGGATCTGATTTTTTTTTTAATTTCTTCAGTTTCTGTTATTAT
GTCTCCATTTTATTTTCTGATTTTGTTACTTTGGATACTGTCTCTGTGCC
CTCTCTTTAGTCTGGTTAAGGGTTTATCTATCTTGTTGATTTACTCAAAG
ATATAATTCCTGGTTTTGTTGATTTTTTTGTATAGTTCTTTCTATTTCGT
TGATTTCAGCCTTGAGTATATTTCCTGCCTTCTACTCCTCTTGGGTGTAT
TTGCTTCTTTTTCTTCTAGAGTTTTCAGATGTGCTGTTAAGCTGCTATTG
TATGCTCTCTCCAGCTTTTTTTATGCAGGTACTGAAGAGTTATGAGTTTT
TCTCTTAGCATTGCTTTTATTGTTCCCCATAAGTTTGGGCATGTGCCTTA
ATTTTCATTAAATTATAGAAAGTCACCAATTTCCTTCTTTATTTCTTCCC
TGACCAAGTTGTCATTGATTGGATAGTTGTTCAGCTTCCGTGTGGATGTG

NNNCCCATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGAAACTATGAACAATTCGCTCT
ACATGAACAATGCAGGTAGTAAGGGATTAAAAATAAACAAAATGCATTTC
ATATATTGATACAGTGCAAATTGTCGCATTCCACAATATAATGGATTTCT
GTGATTGTTCAGTCTTATTTGCAAATGTCGGTGAGGTAAAACCATATCTT
CTTGCCTTATTGTGACTTGAAACCATATCTCATTCTTTTGTCATTTTGTC
TTTTTTTTTTCCAGAGTGGAGGACTGAACTTGCTAGGCAAGTGCTCTACT
ACTGAGCTAAATTCCCAACACCATATTCTCTTGTCAATCTAGACTCCTTG
GTTAGAGAAGTCCTGAAAATGGTATCTGCATACCTACTCTCTTGACTATA
AACTCACATGGTGCAAGTGAGCACAAACAGCTGCAAACTAGCACAAGTAC
ATTGAGATAATAGTTCTGACATTCCATCCCTCATAACAGTGAAGGAGAGA
GTGTAAAATATTTATAGTTCTTCATATGTAAAAATTACATCAGTCACATT
AATAATACCATTTAATCTGAAAAATTTTGAGTCCAAGATCTGTTACTCTA
GAGAAAAATGGGTGGCTGCACAGAATTTTGCAAGGAGCATGCATGTGGCT
TCTCTTACTGCAGCATCCTCTCCTACTCATCACCAAAACCACACTCGAGT
TGC

Query= MSMg01no452_d22.g1 MSMg01no452_d22.g1 CHROMAT_FILE:
MSMg01no452_d22.g1 PHD_FILE: MSMg01no452_d22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:45 2005
         (674 letters)



>mm_chr1_48045975_48047048
          Length = 1074

 Score = 1257 bits (650), Expect = 0.0
 Identities = 669/676 (98%), Gaps = 2/676 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaaactatgaacaattcgctctacatgaacaatgcaggtagtaagggattaaaaataaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 agaaactatgaacaattcgctctacatgaacaatgcaggtagtaagggattaaaaataaa 258

                                                                       
Query: 61  caaaatgcatttcatatattgatacagtgcaaattgtcgcattccacaatataatggatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 caaaatgcatttcatatattgatacagtgcaaattgtcgcattccacaatataatggatt 318

                                                                       
Query: 121 tctgtgattgttcagtcttatttgcaaatgtcggtgaggtaaaaccatatcttcttgcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tctgtgattgttcagtcttatttgcaaatgtcggtgaggtaaaaccatatcttcttgcct 378

                                                                       
Query: 181 tattgtgacttgaaaccatatctcattcttttgtcattttgtctttttttttt--ccaga 238
           |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||
Sbjct: 379 tattgtgacttgaaaccatatctcattcttttgtcattttgtcttttttttttttccaga 438

                                                                       
Query: 239 gtggaggactgaacttgctaggcaagtgctctactactgagctaaattcccaacaccata 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 gtggaggactgaacttgctaggcaagtgctctactactgagctaaattcccaacaccata 498

                                                                       
Query: 299 ttctcttgtcaatctagactccttggttagagaagtcctgaaaatggtatctgcatacct 358
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct: 499 ttctcttgtcaatctagactccttgattagagaagtcctgaaaatggtatctgtatacct 558

                                                                       
Query: 359 actctcttgactataaactcacatggtgcaagtgagcacaaacagctgcaaactagcaca 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 actctcttgactataaactcacatggtgcaagtgagcacaaacagctgcaaactagcaca 618

                                                                       
Query: 419 agtacattgagataatagttctgacattccatccctcataacagtgaaggagagagtgta 478
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 agtagattgagataatagttctgacattccatccctcataacagtgaaggagagagtgta 678

                                                                       
Query: 479 aaatatttatagttcttcatatgtaaaaattacatcagtcacattaataataccatttaa 538
           |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 aaatttttatacttcttcatatgtaaaaattacatcagtcacattaataataccatttaa 738

                                                                       
Query: 539 tctgaaaaattttgagtccaagatctgttactctagagaaaaatgggtggctgcacagaa 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 tctgaaaaattttgagtccaagatctgttactctagagaaaaatgggtggctgcacagaa 798

                                                                       
Query: 599 ttttgcaaggagcatgcatgtggcttctcttactgcagcatcctctcctactcatcacca 658
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 ttttgcaaggagcatgcatgtggcttctcttactgcagcatcctctcctactcatcacca 858

                           
Query: 659 aaaccacactcgagtt 674
           ||||||||||||||||
Sbjct: 859 aaaccacactcgagtt 874


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1074
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1064
Effective search space:   706496
Effective search space used:   706496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)