Query= MSMg01no452_e18.b1 MSMg01no452_e18.b1 CHROMAT_FILE:
MSMg01no452_e18.b1 PHD_FILE: MSMg01no452_e18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:49 2005
(692 letters)
>mm_chr1_138623507_138624598
Length = 1092
Score = 1232 bits (637), Expect = 0.0
Identities = 678/693 (97%), Gaps = 5/693 (0%)
Strand = Plus / Plus
Query: 5 gaattcataacaatgtgtacattagca-tttttttatctttaagttagtttaaatgtcaa 63
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 200 gaattcataacaatgtgtacattagcattttttttatctttaagttagtttaaatgtcaa 259
Query: 64 tattttaggcagaagattctgggtccccccttcctccagggtttctttgtgtagccctgg 123
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 260 tattttaggcagaagattctgggtccctccttcctccagggtttctttgtgtagccctgg 319
Query: 124 ctgttttggaacttgttctgtagagcaggctgatctcaactctcacgcatctgcctgcct 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ctgttttggaacttgttctgtagagcaggctgatctcaactctcacgcatctgcctgcct 379
Query: 184 ctgcctctcagagtgctgggattaaaggtatatgcccctactgtctagcatttctgggtc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ctgcctctcagagtgctgggattaaaggtatatgcccctactgtctagcatttctgggtc 439
Query: 244 tttt-taaaaagatttatttattattataatctaagtatactatagctgtcttcaggtgt 302
|||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 440 ttttaaaaaaagatttatttattattataatctaagtatactatagctgtcttccggtgt 499
Query: 303 actaggagagggtgtcag---ccattacagatggttgtgaaccaccatgtggttgatgga 359
|||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct: 500 actaggagagggtgtcagatcccattacagttggttgtgaaccaccatgtggttgatgga 559
Query: 360 acttgaactcaggaccttcagaagagcagtcagtgctcttaaccgccaagccatctttct 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 acttgaactcaggaccttcagaagagcagtcagtgctcttaaccgccaagccatctttct 619
Query: 420 ccagcccccgtttctgggtcttaatgtggctgatgacaatgatgttgctcaggattaact 479
|||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 620 ccagcccctgtttctgggtcttaatgtggctgatgacaatgatgtagctcaggattaact 679
Query: 480 taattgcttactggtatatgccgtgtgctacctgtgattcttagctatggaattaagctt 539
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 taattgcttactgatatatgccgtgtgctacctgtgattcttagctatggaattaagctt 739
Query: 540 tcactgaagtccaaaacaagtcccaggtcaagtgtcaatgggaccaggggttggtgggct 599
|||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct: 740 tcactgaagtccaaaacaagtctgaggtcaagtgtcaatgggaccagggcttggtgggct 799
Query: 600 tggtgaggcccattgtgcctattgcttcttttccttgaaaagttgccataaatttctgtt 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 tggtgaggcccattgtgcctattgcttcttttccttgaaaagttgccataaatttctgtt 859
Query: 660 attagggagcatggaacaaatagatggaccttc 692
|||||||||||||||||||||||||||||||||
Sbjct: 860 attagggagcatggaacaaatagatggaccttc 892
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 692
Length of database: 1092
Length adjustment: 10
Effective length of query: 682
Effective length of database: 1082
Effective search space: 737924
Effective search space used: 737924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no452_e18.g1 MSMg01no452_e18.g1 CHROMAT_FILE:
MSMg01no452_e18.g1 PHD_FILE: MSMg01no452_e18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:49 2005
(624 letters)
>mm_chr1_138771268_138772291
Length = 1024
Score = 1166 bits (603), Expect = 0.0
Identities = 623/639 (97%), Gaps = 15/639 (2%)
Strand = Plus / Minus
Query: 1 caggatagccagggctcacttaacacccaaccccacccccaagtaaagccgatgttttac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 978 caggatagccagggctcacttaacacccaaccccacccccaagtaaagccgatgttttac 919
Query: 61 ttacacatgtacacaggcacactcacctctcagatgcagatgaatagagccctttgggaa 120
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 918 ttacacatgtacacaggcacacacacctctcagatgcagatgaatagagccctttgggaa 859
Query: 121 aagactacggtgactgaag---------------tcagtgctcgtgcaacgtgctgttga 165
||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 858 aagactacggtgactgaagctgtggatcctgacttcagtgctcgtgcaacgtgctgttga 799
Query: 166 ctttgtattagtaaatacagtcccacgtctcgactgtctgaacggcgtgtatgatttatc 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 ctttgtattagtaaatacagtcccacgtctcgactgtctgaacggcgtgtatgatttatc 739
Query: 226 ctttggttagtttccagtagtcttcagttcctgatgtgtatgggttttgttccttgttgg 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 ctttggttagtttccagtagtcttcagttcctgatgtgtatgggttttgttccttgttgg 679
Query: 286 agtttcagccactgatgcttcttccactttgataaagacctttttgcttggctcactttc 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 agtttcagccactgatgcttcttccactttgataaagacctttttgcttggctcactttc 619
Query: 346 cctgtctcagtgcaatccgtatccttgatagcagggcccactgaagggcactgagagcta 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 cctgtctcagtgcaatccgtatccttgatagcagggcccactgaagggcactgagagcta 559
Query: 406 gctttctgtaggcagtgaatcaccgtgctggcctcttgagcccaagccagtcagggattt 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 gctttctgtaggcagtgaatcaccgtgctggcctcttgagcccaagccagtcagggattt 499
Query: 466 tgtgcaagagtcaaagaatcctgtacaaccttcctagacagaaatgtgtgtgtcactgct 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 tgtgcaagagtcaaagaatcctgtacaaccttcctagacagaaatgtgtgtgtcactgct 439
Query: 526 gagggatgtacatgccaatttaatctaataattattaactgttaatctcctatctcaatc 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 gagggatgtacatgccaatttaatctaataattattaactgttaatctcctatctcaatc 379
Query: 586 agacacagcagggacttagcgaagaggaaacctatgacc 624
|||||||||||||||||||||||||||||||||||||||
Sbjct: 378 agacacagcagggacttagcgaagaggaaacctatgacc 340
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1024
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1014
Effective search space: 622596
Effective search space used: 622596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
