Query= MSMg01no452_g09.b1 MSMg01no452_g09.b1 CHROMAT_FILE:
MSMg01no452_g09.b1 PHD_FILE: MSMg01no452_g09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:56 2005
(569 letters)
>mm_chr1_58489643_58490611
Length = 969
Score = 1050 bits (543), Expect = 0.0
Identities = 566/579 (97%), Gaps = 10/579 (1%)
Strand = Plus / Plus
Query: 1 acctcaacaaccacaccttttaaatgtactcctatgtcgagacaattaaggtctataaat 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 191 acctcaacaaccacaccttttaaatgtactcctatgtcaagacaattaaggtctataaat 250
Query: 61 tgtcttctggtctatatgaaaaccagagaacttcagaaattctgagcttctacaaaaa-- 118
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 251 tgtcttctggtctatatgaaaaccagagaacttcagaaattctgagcttctgcaaaaaaa 310
Query: 119 ------aaataaatgggggcgcagacttgtaggccaggaatcgagacgatgaggtcctta 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 aaaaataaataaatgggggcgcagacttgtaggccaggaatcgagacgatgaggtcctta 370
Query: 173 ggaaaccacagaaaacttatatgttttctttccagaaaaatgtgcgtagaaatacaactt 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 ggaaaccacagaaaacttatatgttttctttccagaaaaatgtgcgtagaaatacaactt 430
Query: 233 caagtagtttagggttctagagagagcaaattggttaagggcacttgctgctcttaccga 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 caagtagtttagggttctagagagagcaaattggttaagggcacttgctgctcttaccga 490
Query: 293 ggacctgggtttggttcccagcaccacacggctgctcacagcttcagttctaagggaccc 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 ggacctgggtttggttcccagcaccacacggctgctcacagcttcagttctaagggaccc 550
Query: 353 aaaaccctcttctgacctccgcaggtaccaggcatgcacacagtgaatatacattcaatc 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 aaaaccctcttctgacctccgcaggtaccaggcatgcacacagtgaatatacattcaatc 610
Query: 413 atataaataaaattaaggaaaaaaa--gcccctaagaaccaagtaatccatgaactaaag 470
|||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 611 atataaataaaattgaggaaaaaaaaagcccctaagaaccaagtaatccatgaactaaag 670
Query: 471 gctaccctttagttttagggtgttggtctgcacttgtgaagatgattagatgccttcagc 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 gctaccctttagttttagggtgttggtctgcacttgtgaagatgattagatgccttcagc 730
Query: 531 ctaatgctccagttgctgcattaattatatgctaagcta 569
|||||||||||||||||||||||||||||||||||||||
Sbjct: 731 ctaatgctccagttgctgcattaattatatgctaagcta 769
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space: 536081
Effective search space used: 536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no452_g09.g1 MSMg01no452_g09.g1 CHROMAT_FILE:
MSMg01no452_g09.g1 PHD_FILE: MSMg01no452_g09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:57 2005
(617 letters)
>mm_chr1_58615022_58616042
Length = 1021
Score = 1122 bits (580), Expect = 0.0
Identities = 611/622 (98%), Gaps = 6/622 (0%)
Strand = Plus / Minus
Query: 1 taagttagag--tttttttgtggaattttaaattagaaatttagttgggggtggtaataa 58
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 821 taagttagaggttttttttgtggaattttaaattagaaatttagttgggggtggtaataa 762
Query: 59 gagagtgcagcatggggaactaagatcaaggttcatcatatacatatatggaaatgtcgt 118
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct: 761 gagagtgcagcatggggaactaggatcaaggttcatcatatacatatatggaaatgtcat 702
Query: 119 aatagaaccattgtttgtacaagtaatacacattactacttttaaaatttagtgcggaat 178
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 701 aatagaaccattgtttgtacaagtaatacacattactacttttaaaatctagtgcggaat 642
Query: 179 tcaacaaacatagaaagggcatctttttagtaagagagtgtttcagttatttcatagaca 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 tcaacaaacatagaaagggcatctttttagtaagagagtgtttcagttatttcatagaca 582
Query: 239 atcctgcttcttcaggttctattttcatttgtcttggtttttttccttattctttccttt 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 atcctgcttcttcaggttctattttcatttgtcttggtttttttccttattctttccttt 522
Query: 299 tgaatgacaaagaagattgaaatacagtgtatcttatttttaatccaaaattaaatagat 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 tgaatgacaaagaagattgaaatacagtgtatcttatttttaatccaaaattaaatagat 462
Query: 359 aagactaccctcaatagcaagcatttaaca-attgagcatgtatttttt-ccaggctttt 416
|||||||||||||||||||||||||||| | |||||||||||||||||| ||||||||||
Sbjct: 461 aagactaccctcaatagcaagcatttaa-atattgagcatgtatttttttccaggctttt 403
Query: 417 tt-aaaaaagtaagctttaattggaattacaatttacagactattattcagtttgatttt 475
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 402 tttaaaaaagtaagctttaattggaattacaatttacagactattattcagtttggtttt 343
Query: 476 gctacttaatcagcttgctacctatatgacccttgctttttttagatttgacatcatttt 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 gctacttaatcagcttgctacctatatgacccttgctttttttagatttgacatcatttt 283
Query: 536 tcagcgttgttgttgttgttgacgatccagggtgttgctgtgtagtccaggcttgtctta 595
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 282 tcagcgttgttgttgttgttgacgatccagggggttgctgtgtagtccaggcttgtctta 223
Query: 596 gtgcttactgcataccccagag 617
||||||||||||||||||||||
Sbjct: 222 gtgcttactgcataccccagag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1021
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1011
Effective search space: 613677
Effective search space used: 613677
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
