BAC Information

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BAC

Clone NameMSMg01-452I21
Chromosome1 (Build37)
Map Location 45,910,716 - 45,911,189
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041752, LOC383640, Col3a1, Col5a2, EG666799, LOC631429, LOC666814, EG666819, Wdr75
Downstream geneEG433297, LOC383644, Slc40a1, LOC670603, EG227054, LOC100042453, EG212225, Dnahc7b, LOC666855, Slc39a10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-452I21.T7 (MSMg01no452_i21.b1)MSMg01-452I21.TJ (MSMg01no452_i21.g1)
ACCAG539779AG539780
length734740
length of high quality
(start - end)		655 (80 - 734)658 (80 - 737)
definitionCHROMAT_FILE: MSMg01no452_i21.b1 PHD_FILE: MSMg01no452_i21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:23:08 2005CHROMAT_FILE: MSMg01no452_i21.g1 PHD_FILE: MSMg01no452_i21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:23:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNTTCTCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCACTATTTGTCTGCAAGAAACCATATGAGAATTTACACCA
GGAGGAGTCATTTTTTTAAAAGTCACTTATATAGCCTGTTGTATATGTAC
ATATCAAAAGGTCAAAATATCAAGTTAAATTTTTTGAATTATTGCTGAAT
TATTAAAATGTCAAACTAGTTCAAACAAATGTTATTGTTTTTTTAACAAT
TCCCCCCCCCTTTTTTTTTTACAATTTCCCCTTAATTGAAAAATGGTCAA
GCATTAGGCAAATGTCTTTTTATTGTTGTTGTTTGGTTGATTTAGTTTTT
TAAGGACTAGATCTTACTGTCAAGCCCAGGTTGGTACCAAACTCATGGTC
TCCTTTGCGTGGCATTTTAAGTACTGGTATTACAGGTATGAACTACACAC
TCAGCTGGACAATTATTTTGAACTGAGTCAAATATAGTTAAATAAAATTT
CCTTTAGTTCTATAATTGGTACTGCTTCATACTGTAAGTGACTTTTGAAC
TTCCCCAAACACTCTTGTTACCAAGCGTGAAATCACATGGCTTGATTGGA
AGCCTACATTTCCAAGGCTTTCCGGAGCCATGTGAGTCTTTACATTTGGA
TACTGGCCAGGAAGAGTAAAATTGGTTGTATTTGGTGACAATCTGAGGAC
TTACCTGGCAGGAGCATACATAGGAGTGTGCAGT

ATTAAACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTCTCACTCAGCCCACACTC
ATTCACAGCTTGACCTCTAAGGTGTTCTGACATATCCAGGATGATGGGTG
AGACAGCAAAACCCGCCCCAATACCTGGGGTAACCAGGATCCCTGGGACC
CAGGGACTCAAGTACCCTGCCCAACCAGAGATGCATTCAACTTCCAGCTT
CCACCTGGGCCTGAAGCAGAGCCTGTGTTCTGGATCCCCATCCACTCAGA
AGACAGGCAGATGTCCTCAAGGACACATCTAGGATCACAAGATCACAGGC
TCTCAGGAGAGACAGACTTAATTCAGAGACATCAAGGCCAGTTAATACCA
GAGACAACCAGATGGTAAAAGGCAAGCACAAGAAAATCAGCAACAGAAAA
CAATACTACTTGACAACATCAGAACCCAATTCTTCTACCACATCAAGCCC
AGGATACCCCAACATACCTAAAAAGCAAAATTCAGATCTAAATTCTCATC
TCATGAAGAAAATAGAGGACTTCAAAAGTGACATAAATAACTCCTTTAAA
GAAATATAGGAGAACACAGATAAAGATGTAGAAGCCCTTAGAGAGGAAAC
ACATGAATCCCTTANAGAAATACAGAAAAATACAAACAGGTGAAGTAATT
GAACAAAACTATCCAGGATCTAAAATTGGAAATAAAAAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no452_i21.b1 MSMg01no452_i21.b1 CHROMAT_FILE:
MSMg01no452_i21.b1 PHD_FILE: MSMg01no452_i21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:08 2005
         (655 letters)



>mm_chr1_45910139_45911193
          Length = 1055

 Score =  832 bits (430), Expect = 0.0
 Identities = 463/474 (97%)
 Strand = Plus / Minus

                                                                        
Query: 182  ttttttttttacaatttccccttaattgaaaaatggtcaagcattaggcaaatgtctttt 241
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1051 ttttttttttacaatttccccttaattgaaaagtggtcaagcattaggcaaatgtctttt 992

                                                                        
Query: 242  tattgttgttgtttggttgatttagttttttaaggactagatcttactgtcaagcccagg 301
            ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct: 991  tattgttgttgtttggttgatttagttttttaaagactagatcttactgttaagcccagg 932

                                                                        
Query: 302  ttggtaccaaactcatggtctcctttgcgtggcattttaagtactggtattacaggtatg 361
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| 
Sbjct: 931  ttggtaccaaactcatggtctcctttgcgtggcattttaagtactggtattacaagtatc 872

                                                                        
Query: 362  aactacacactcagctggacaattattttgaactgagtcaaatatagttaaataaaattt 421
            | |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 871  agctacacactcagctggacaattattttgaactgagtcaaatataattaaataaaattt 812

                                                                        
Query: 422  cctttagttctataattggtactgcttcatactgtaagtgacttttgaacttccccaaac 481
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811  cctttagttctataattggtactgcttcatactgtaagtgacttttgaacttccccaaac 752

                                                                        
Query: 482  actcttgttaccaagcgtgaaatcacatggcttgattggaagcctacatttccaaggctt 541
            |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 751  actcttgttaccaatcgtgaaatcacatggcttgattggaagcctacatttccagggctt 692

                                                                        
Query: 542  tccggagccatgtgagtctttacatttggatactggccaggaagagtaaaattggttgta 601
            |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct: 691  tccggagccatgtgagtctttacattgggatactggccaggaagagtaaaattgattgta 632

                                                                  
Query: 602  tttggtgacaatctgaggacttacctggcaggagcatacataggagtgtgcagt 655
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631  tttggtgacaatctgaggacttacctggcaggagcatacataggagtgtgcagt 578


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1055
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1045
Effective search space:   674025
Effective search space used:   674025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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