Query= MSMg01no452_j09.b1 MSMg01no452_j09.b1 CHROMAT_FILE:
MSMg01no452_j09.b1 PHD_FILE: MSMg01no452_j09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:11 2005
(703 letters)
>mm_chr1_123119353_123120458
Length = 1106
Score = 1006 bits (520), Expect = 0.0
Identities = 587/618 (94%), Gaps = 18/618 (2%)
Strand = Plus / Minus
Query: 91 gctttgcaggagatggcagataggtcagggtttttt---ttttgtttgtttgttttgttt 147
|||||||||||||||||||||||||||||||||||| || |||||||| |
Sbjct: 1106 gctttgcaggagatggcagataggtcagggttttttgggtt---tttgtttg-------t 1057
Query: 148 ttgtttgtttgttttcgagacagggtttctctgtatagccctggctgtcctggaactcac 207
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1056 ttgtctgtttgttttcgagacagggtttctctgtatagccctggctgtcctggaactcac 997
Query: 208 tttgtagaccaggctggccttgaactcagaaatccgcctgcctctgcctcccaagtgctg 267
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 996 tttgtagaccaggctggccttgaactcagaaatccacctgcctctgcctcccaagtgctg 937
Query: 268 ggattaaaggcgtgtgccaccaccgcttggctaggtcagtgttcttaaccaagggggtgt 327
|||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct: 936 ggattaaaggcgtgtgccaccatcgcctggctaggtcagtgttcttaaccaagggggtgt 877
Query: 328 ttccaggtagtgcctctgacccagctccacctactccagctgcaccaatctggacacatt 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 876 ttccaggtagtgcctctgacccagctccacctactccagctgcaccaatctggacacatt 817
Query: 388 tgtcttcagtagggcctattttcctaggaatttttttctttggggatcaaggaagagcag 447
|||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 816 cgtcttcagtagggcctattttcctaggaatttttttctttggggataaaagaagagcag 757
Query: 448 gggccaaagtgtattcttgtaaaatctccagcaaccaaagctgaagcctgcaaccggtag 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 756 gggccaaagtgtattcttgtaaaatctccagcaaccaaagctgaagcctgcaaccagtag 697
Query: 508 cttaaggctggaaccggaagcagacttgcattcatgttctttcacaactgtttcgctgtc 567
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 ctgaaggc-ggaaccggaagcagacttgcattcatgttctttcacaactgtttcgctgtc 638
Query: 568 cttggccatggtt----cagttttacttcatatagaaccccagccaccaatgtcccaaca 623
||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||
Sbjct: 637 cttggccatggttggttcagttttatttcatatagaatcccagccaccaatgtcccaaca 578
Query: 624 ccaggctcatgtgtagccatgcagggcattctggtatccctcctctttcctccacgggtt 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 ccaggctcatgtgtagccatgcagggcattctggtatccctcctctttcctccacgggtt 518
Query: 684 cacaaggctaagcaatct 701
| ||||||||| ||||||
Sbjct: 517 cgcaaggctaatcaatct 500
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 703
Length of database: 1106
Length adjustment: 10
Effective length of query: 693
Effective length of database: 1096
Effective search space: 759528
Effective search space used: 759528
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no452_j09.g1 MSMg01no452_j09.g1 CHROMAT_FILE:
MSMg01no452_j09.g1 PHD_FILE: MSMg01no452_j09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:11 2005
(566 letters)
>mm_chr1_123093622_123094587
Length = 966
Score = 1056 bits (546), Expect = 0.0
Identities = 561/566 (99%)
Strand = Plus / Plus
Query: 1 tcatctctagaatggagatgcccagcagctagagaagaaaacctggaactgtcaaattac 60
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcatctctagaatggagaggcccagcagctagagaagaaaacctggaactgtcaaattac 260
Query: 61 tgggccattgtttgccaagtgagcaagagcagagattctaactcaatcccactggcttcc 120
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 261 tgggccattgtttgccaagtgagcaggagcagagattctaactcaatcccactggcttcc 320
Query: 121 tacttcctcctaacaatcgcgcacatatttgtagtactctctggtttacctcaactattt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tacttcctcctaacaatcgcgcacatatttgtagtactctctggtttacctcaactattt 380
Query: 181 ttaattgtgttcttgcttcctttactcaataatctaaagacagagttgagaagggcctat 240
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 381 ttaactgtgttcttgcttcctttactcaataatctaaggacagagttgagaagggcctat 440
Query: 241 tttgactcttaagaatttggtttgtaactacacctttagccacatggcttgatgatgtct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttgactcttaagaatttggtttgtaactacacctttagccacatggcttgatgatgtct 500
Query: 301 ctccaactcaatttgtctgacttcttaaagatgccctgtggagttgtaccattcagctac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctccaactcaatttgtctgacttcttaaagatgccctgtggagttgtaccattcagctac 560
Query: 361 ccataaaatgtaggcgacttgtgcacagaaggcctccttgtgaagatgtagagaagatga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccataaaatgtaggcgacttgtgcacagaaggcctccttgtgaagatgtagagaagatga 620
Query: 421 gtctgtgttccccgggtccattcattggacagtggagtcactgaagggaagagggaggtc 480
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtctgtgttccccaggtccattcattggacagtggagtcactgaagggaagagggaggtc 680
Query: 481 tttggatcttgtctcaagacccaaagtccacctcattccatgccaatctacctctttctc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tttggatcttgtctcaagacccaaagtccacctcattccatgccaatctacctctttctc 740
Query: 541 catccaattccagagacagagagaga 566
||||||||||||||||||||||||||
Sbjct: 741 catccaattccagagacagagagaga 766
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 966
Length adjustment: 10
Effective length of query: 556
Effective length of database: 956
Effective search space: 531536
Effective search space used: 531536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
