CCCCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCCTTACACTGGTGCATAGAGCCTTCACAGGACCAAGGGCCT
CTCCCCCCCCCCCCTCCATTGATGACCAACTAGGCCATCCTCTGCTACAT
ATGCAGCTGGAGCCATGAGTCCTGCCACATGTTCTCTTTGGTTGTTGATT
TAGTCTCTGGGAGCTCTGGGGTTACTGGTTAGTTCATATTGTGGTTCCTC
CTATGGGGCTGCAAACTCCTTCAACACCTTGGGTCCTTTTAAAAACTGAG
CCATCTCCCTAATCCCAGAAGAATGGTTTTAAATTGAACCTGGATCCCAC
TGGGACTTTCTGGTCTGTAGTCAACTGGCCAAATCAACTGAAGGAAGAAA
GACTGTACCTGGTCAAACTTTGTCACCAAACTACCTCACTTGCATGGGGA
AAACACTGATTAAGTATAGCAGAGAATTCAGAATAAGTCTACAATGTGTG
GCTATAAGACAAAAATACACGACCAATCATGTCCCTATGCATAAGCAATG
GATTGATTTACAAACTATAATTTTCACAAGTAATAAATGTCTAGTAAAAC
TATGTATTTTTTAATTTAGCTAATCAGTTTCCTATAGAGCCCAGAGACTG
GGTTTATGTTTCTCCCTATCTATAATAAATGAGTGATTTTTGTAGTGACT
ACATTGACCATCTGGTTCATCCTTATTGGAATAAACTTTTTAAAACACAG
N

CCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTACTCTACTCTTCCTTTGTA
TTTTTGGGTTTTTTTTTTCTGTTGTTGTTGCTCTGTCTTTCTGCTATATG
AGTATGAACCTGTGCCTGTCTGAATATTATCTTATGATTCTGAGTGTCCC
TGTCTCTTTGTCTCTGTGTGTATCCCTGTGAGCTTGTCCCTAATAAAGGG
CTCCCTGAATATTGTCTTGTGACTCTCTCTCTTTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATTGCTGTGTGTCCCAAAA
AAAGGGCTTTTTCCCTTCTCTTTTATTAAATAATACAATAACCATCTCAT
GGGGAAAGAATGAGGGATACCCACAGGAACCTTTGTAAGGCTACTATTTC
CTCCTATTTTTATTAAATTATCATCATAATGCATATATAAGCATGTGCAT
TACTCCCGGGAAGAGTATATAATTTAAGATTACAGCTATGTATTAATTTA
GATTGTAAAAGTTATTTACATGAGAAATCTAAGGTTTGTTTTTACATTGT
TTACTTAAAAACAGATTAAACAAATAGATTGAGCACACAGTAGGATAGCA
GTCAGTACTGGCTAGTTTTGTGTCAACTTGACACAGCTGGAGTTATCACA
GAGAAAGGAGCTTCAGTTGAGGAAATGCCTCCATGAGATCCAACTGT

Query= MSMg01no452_l01.b1 MSMg01no452_l01.b1 CHROMAT_FILE:
MSMg01no452_l01.b1 PHD_FILE: MSMg01no452_l01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:19 2005
         (693 letters)



>mm_chr1_53681441_53682532
          Length = 1092

 Score = 1071 bits (554), Expect = 0.0
 Identities = 629/658 (95%), Gaps = 10/658 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcccttacactggtgcatagagccttcacaggaccaagggcctctcccccccccc 63
           ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||  
Sbjct: 211 ggaattcccttacactggtgcatagagccttcacaggaccaagggc--ctcccccccc-- 266

                                                                       
Query: 64  cctccattgatgaccaactaggccatcctctgctacatatgcagctggagccatgagtcc 123
              |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 267 ---ccattgatgaccgactaggccatcctccgctacatatgcagctggagccatgagtcc 323

                                                                       
Query: 124 tgccacatgttctctttggttgttgatttagtctctgggagctctggggttactggttag 183
           |||||||||||||||||||||| || ||||||| |||||| |||||||||||||||||||
Sbjct: 324 tgccacatgttctctttggttggtggtttagtccctgggatctctggggttactggttag 383

                                                                       
Query: 184 ttcatattgtggttcctcctatggggctgcaaactccttcaacaccttgggtccttttaa 243
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttcatattgtggttcctcctacggggctgcaaactccttcaacaccttgggtccttttaa 443

                                                                       
Query: 244 aaactgagccatctccctaatcccagaagaatggttttaaattgaacctggatcccactg 303
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 444 aaactgagccatctccctaatcccagaagaatagttttaaattgaacctggatcccactg 503

                                                                       
Query: 304 ggactttctggtctgtagtcaactggccaaatcaactgaaggaagaaagactgtacctgg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ggactttctggtctgtagtcaactggccaaatcaactgaaggaagaaagactgtacctgg 563

                                                                       
Query: 364 tcaaactttgtcaccaaactacctcacttgcatggg-gaaaacactgattaagtatagca 422
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 564 tcaaactttgtcaccaaactacctcacttgcatgggagaaaacactgattaagtatagca 623

                                                                       
Query: 423 gagaattcagaataagtctacaatgtgtggctataagacaaaaatacacgaccaatcatg 482
           ||||||||||||||||||||||||||||||||||||||||||||| || |||| | ||||
Sbjct: 624 gagaattcagaataagtctacaatgtgtggctataagacaaaaattcaagacctaccatg 683

                                                                       
Query: 483 tccctatgcataagcaatggattgatttacaaactataattttcacaagtaataaatgtc 542
           |||| |||||||||||||||||||||||| ||||||  ||||||||||||||||||||||
Sbjct: 684 tcccaatgcataagcaatggattgatttagaaacta--attttcacaagtaataaatgtc 741

                                                                       
Query: 543 tagtaaaactatgtattttttaatttagctaatcagtttcctatagagcccagagactgg 602
           |||| |||||||||| |||| |||||||||||| ||||||||||||||||||||||||||
Sbjct: 742 tagtcaaactatgtacttttgaatttagctaattagtttcctatagagcccagagactgg 801

                                                                     
Query: 603 gtttatgtttctccctatctataataaatgagtgatttttgtagtgactacattgacc 660
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 gtttatgtttctccctacctataataaatgagtgatttttgtagtgactacattgacc 859


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 693
Length of database: 1092
Length adjustment: 10
Effective length of query: 683
Effective length of database: 1082
Effective search space:   739006
Effective search space used:   739006
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)