NTTTTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGN
GNGGAATTCTCCCTTTTCTGAGGCAATTAGAAGCAGGCTATCTTAAGAGC
ACATAAGAGCACATAAGAGCCACGGGGAAACCCCTGGGAGGATTTGTCTG
TTGAATGTGCTATGCTTTAGTCTCAGGGCAGCCTCTTCTTATGTGTGTTA
ATGCAGATACACATGTAGAATGCACGCATGCAGACCCAAGTACGTGCAAG
AACATGCATGCATACATAGAGATGCACACAGATGCACAAGTCTTATCATA
CACCAGGTCAGAATTCTGGGTAAGAATGAGTTTATTCCACCTAGAAGGCC
ACACAGAAAGTGGGAATTAGACTCAGGGTTAGGTTCAACACCATCGCACG
CAGAAGCACGTGCTCCTTCTAGGATGGTTTATGACATCATAGAACTGGCT
CTAACCATCAAGGTTCTGGGCTGACTGACCTGCACAGAAAGGCAGAGCTC
TAGGGACCAAGGACTAAGGCTTCCTCTTGCTTGTGTGCTTCTCCTGAAGG
CCTCTCAGGCTACTCATCTCATAGCTTATCCACACAGGCGTGGGTCGTCC
TCACTTCCAAGTTGTCTGCCAGGTCTTACCACTTCAAAGTTGTGGACATC
ACACTGTCTCCAGAGTGCCTCATTGGCTGGTTTTCAGCCTCCTGACCAAG
TGTCTTTTTTGCTCTTCTTTCTTTGCTGCTTTGGCCAGCAAAGN

CATGCTANTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTTGGTGGGGTGTGGGGGGGGGAGGGGGGTGGGCGAGGGGGGGG
AGGGGGGGAAGGGGGGGGCTGTTCTTTAAAANGGNNAACAAAATACCCCC
AANNGGNNANATACNNNAGCCAAACTATTNNANCAAAAACTTGAAGAAAA
AACATTCCAAAAACGGCCCCACCCGGGGGCCCATCCCATTTACNNCCCCC
AAAACCCAAAACAAATTGGGAAGGGCCAAAAATTTTTTTGTTAAAAAAAA
CTTAAAAAACTTTTTCCTCAAAAACTTTTTCCCGGGCCGGAAAAATAAAA
AAGGGGGGGGGTTTACCCCCAACTTTTTTAATAAAAACAAAATTTCCCCC
NGGGGGACTCTAAAAAAAACCCAAAAAACACCCAGGGGGTTTCCCCCCCC
AAAAGAGAAAAAACAAAAAAAAAAACCACCCCCCCCCAAAATTTTCCGGG
GAAAAACCCCCCACACAAAAAAAAAACANNNNAAAAACACACCCCCCCCC
CCTCTTTTAATAAAAAAAAAAAATTTTTTTTAAATTAAAAAAAAAAAAAA
CATTTTTTCTTAAAAAAAAAACTTCTCTCTCTTCNTATAAAAAACAACAA
AAAAAAAAAAANAANNNNTTTTTTTATAAAAAAGGGGAGGGAAAAAACNN
CCCCCAACANCACACCCCCCCCACCCACACCCCCNAAACCCCCCCCAACC
CCCCNACCAACCACCACACCCCCCTTCAAAATCTCNCATATCCCCCCCNC
CNCCCCTTCTCTCCAATTTTTTATTTGTGGGGGGTGGTTTG

Query= MSMg01no452_l13.b1 MSMg01no452_l13.b1 CHROMAT_FILE:
MSMg01no452_l13.b1 PHD_FILE: MSMg01no452_l13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:22 2005
         (621 letters)



>mm_chr1_82426959_82427979
          Length = 1021

 Score = 1048 bits (542), Expect = 0.0
 Identities = 596/620 (96%), Gaps = 12/620 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   aattagaagcaggctatcttaagagcacataagagcacataagagccacggggaaacccc 60
           |||||||||||||||||||          |||||||||||||||||||| ||||||||||
Sbjct: 211 aattagaagcaggctatct----------taagagcacataagagccactgggaaacccc 260

                                                                       
Query: 61  tgggaggatttgtctgttgaatgtgctatgctttagtctcagggcagcctcttcttatgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgggaggatttgtctgttgaatgtgctatgctttagtctcagggcagcctcttcttatgt 320

                                                                       
Query: 121 gtgttaatgcagatacacatgtagaatgcacgcatgcagacccaagtacgtgcaagaaca 180
           ||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgctaacgcacatacacatgtagaatgcacgcatgcagacccaagtacgtgcaagaaca 380

                                                                       
Query: 181 tgcatgcatacatagagatgcacacagatgcacaagtcttatcatacaccaggtcagaat 240
           ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcgtgtatacatagagatgcacacagatgcacaagtcttatcatacaccaggtcagaat 440

                                                                       
Query: 241 tctgggtaagaatgagtttattccacctagaaggccacacagaaagtgggaattagactc 300
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 441 tctgggtaagaatgagtttattccatctagaaggccacacagaaagtgggaattagactc 500

                                                                       
Query: 301 agggttaggttcaacaccatcgcacgcagaagcacgtgctccttctaggatggtttatga 360
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agggttaggttcaacgccatcgcacgcagaagcacgtgctccttctaggatggtttatga 560

                                                                       
Query: 361 catcatagaactggctctaaccatcaaggttctgggctgactgacctgcacagaaaggca 420
           |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 561 catcatagaactggctttaaccatcacggttctgggctgactgacctgcacagaaaggca 620

                                                                       
Query: 421 gagctctagggaccaaggactaaggcttcct-cttgcttgtgtgcttctcctgaaggcct 479
           ||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||
Sbjct: 621 gagctctagggaccaaggactaaggcttc-tgcttgcttgtgtgcttctcccgaaggcct 679

                                                                       
Query: 480 ctcaggctactcatctcatagcttatccacacaggcgtgggtcgtcctcacttccaagtt 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ctcaggctactcatctcatagcttatccacacaggcgtgggtcgtcctcacttccaagtt 739

                                                                       
Query: 540 gtctgccaggtcttaccacttcaaagttgtggacatcacactgtctccagagtgcctcat 599
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 740 gtctgccaggtcttaccacttcaaagttgtggacatcacactgtctccagagtgcctctt 799

                               
Query: 600 tggctggttttcagcctcct 619
           ||||||||||||||||||||
Sbjct: 800 tggctggttttcagcctcct 819


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1021
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1011
Effective search space:   617721
Effective search space used:   617721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)