Query= MSMg01no452_p20.b1 MSMg01no452_p20.b1 CHROMAT_FILE:
MSMg01no452_p20.b1 PHD_FILE: MSMg01no452_p20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:43 2005
(637 letters)
>mm_chr1_60254868_60255904
Length = 1037
Score = 1203 bits (622), Expect = 0.0
Identities = 631/634 (99%)
Strand = Plus / Plus
Query: 4 ggaattctaggatagagaattcatgtcttggaaaaaaaatatatatatataatcagttta 63
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 204 ggaattctaggatagagaattcatgtcttggaaaaaatatatatatatataatcagttta 263
Query: 64 ttcagatttttttctaattgtgaccatgaaagtgacaactttgaaaatttcaatgttggg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttcagatttttttctaattgtgaccatgaaagtgacaactttgaaaatttcaatgttggg 323
Query: 124 tctgaaactgaaagtcctcttttatttgtatccaaatttaagagtttttcttcttttttc 183
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 324 tctgaaactgaaagtcctcttttatttatatccaaatttaagagtttttcttcttttttc 383
Query: 184 ttctttcttttccccccgtttggaggagtgagaggcagagggaaggagggagaggaatta 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttctttcttttccccccgtttggaggagtgagaggcagagggaaggagggagaggaatta 443
Query: 244 aaagaaagcagtgctgagtgatagagagtgcatgagagtgagatttggaaggtggggctg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aaagaaagcagtgctgagtgatagagagtgcatgagagtgagatttggaaggtggggctg 503
Query: 304 gtagttttcatagttggtggttttcccatgggatgggtgagattttattactgtgtaggt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gtagttttcatagttggtggttttcccatgggatgggtgagattttattactgtgtaggt 563
Query: 364 gttttaaagctttaacaggagctatcatgtactccttcatctgtgcctcagagacatagt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gttttaaagctttaacaggagctatcatgtactccttcatctgtgcctcagagacatagt 623
Query: 424 tttaaacgatactggagttacagataggctgtcccaactaaatacataaaagtgattttg 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tttaaacgatactggagttacagataggctgtcccaactaaatacataaaagtgattttg 683
Query: 484 gtatatgagtgtaatgatatcaaataacagctcaataaaaattcagttataggtcctttt 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gtatatgagtgtaatgatatcaaataacagctcaataaaaattcagttataggtcctttt 743
Query: 544 tgcttggacctctttctttaaccagtactaattcaggtataacttttaaatataatttta 603
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 744 tgcttggacctctttctttaaccagtactaattcaggtataacttttaaatataatttaa 803
Query: 604 aaatatttatacattttaatatgtaactgctaag 637
||||||||||||||||||||||||||||||||||
Sbjct: 804 aaatatttatacattttaatatgtaactgctaag 837
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1037
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1027
Effective search space: 643929
Effective search space used: 643929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no452_p20.g1 MSMg01no452_p20.g1 CHROMAT_FILE:
MSMg01no452_p20.g1 PHD_FILE: MSMg01no452_p20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:43 2005
(674 letters)
>mm_chr1_60430207_60431280
Length = 1074
Score = 1220 bits (631), Expect = 0.0
Identities = 666/679 (98%), Gaps = 5/679 (0%)
Strand = Plus / Minus
Query: 1 cccaatgctaataaatggagtggtgagaaattcagataaaggttcctggccctcctgcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 855 cccaatgctaataaatggagtggtgagaaattcagataaaggttcctggccctcctgcct 796
Query: 61 ttcaaaaactccagaggcctctttaagtcatagctgggaagatggcttatttttgcataa 120
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 795 ttcaaaaactccagaggcctctttaagtcatagctgggaagatggcttgtttttgcataa 736
Query: 121 gacccagctttgatttccatctgtaactctaggggacctgaagcctttttcagatttccg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 gacccagctttgatttccatctgtaactctaggggacctgaagcctttttcagatttccg 676
Query: 181 aagacaatggagacaaatatgt-ggtacacatatatacatgaaggcaaacatttgtgcat 239
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 675 aagacaatggagacaaatatgtacgtacacatatatacatgaaggcaaacatttgtgcat 616
Query: 240 gtaaaataaacacacctttttaaaaagtcacagcacacatacaaagaaatagataacaac 299
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 615 gtaaaataaacacacctttttaaaaagtcacagcacacatacaaagaaataaataacaac 556
Query: 300 actctttataaactctctctaaaaactaaaaatgagattcagattaattctacctttgag 359
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 actctttataaactctccctaaaaactaaaaatgagattcagattaattctacctttgag 496
Query: 360 atgaccaatttttgtggtgtccactgcataataaactcagttttgctttgtttctgtttt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 atgaccaatttttgtggtgtccactgcataataaactcagttttgctttgtttctgtttt 436
Query: 420 tagactgggtctgactatgtggctctggctggcctggaacttgtgatcctcccaactcac 479
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 435 tagactgggtctgactatgtggctctggctggcctggaacttgtgatccttccaactcac 376
Query: 480 ctgcctcagggcgggaatttagacatgtgtggccatgcccaggttaatgacatttttttt 539
|||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 375 ctgcctcaggatgggaatttagacatgtgtgaccatgcccaggttaatgacatttttttt 316
Query: 540 t--aaaaagctttagcaaatatacatctttaatgtaatatagatttaaaacaaataaaca 597
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 ttaaaaaagctttagcaaatatacatctttaatgtaatatagatttaaaacaaataaaca 256
Query: 598 ttaaaagaatt--aaaaaaaaagttgataggctgtgagatgtcgcagcaggtaaagcact 655
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 ttaaaagaattttaaaaaaaaagttgataggctgtgagatgtcgcagcaggtaaagcact 196
Query: 656 tgctgacgagcctagtgac 674
|||||||||||||||||||
Sbjct: 195 tgctgacgagcctagtgac 177
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1074
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1064
Effective search space: 706496
Effective search space used: 706496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
