BAC Information

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BAC

Clone NameMSMg01-453G07
Chromosome1 (Build37)
Map Location 141,444,568 - 141,445,243
singlet/doubletsinglet
Overlap geneCfhr1
Upstream geneNek7, LOC545363, LOC667745, Lhx9, 2310009B15Rik, 1700019P21Rik, LOC100042623, Dennd1b, Crb1, Zbtb41, Aspm, F13b
Downstream geneEG624286, EG214403, BC026782, LOC545399, EG545367, Cfh, Kcnt2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-453G07.T7 (MSMg01no453_g07.b1)MSMg01-453G07.TJ (MSMg01no453_g07.g1)
ACCAG540416AG540417
length741746
length of high quality
(start - end)
681 (54 - 734)613 (82 - 694)
definitionCHROMAT_FILE: MSMg01no453_g07.b1 PHD_FILE: MSMg01no453_g07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:24:15 2005CHROMAT_FILE: MSMg01no453_g07.g1 PHD_FILE: MSMg01no453_g07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:24:15 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NGTTTTTCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCCATTTTTTTCTGAGATGTAACTATAAGTTCAGTGTTG
TTATAAGTAATTTCAAAAATTAATTCAGCTATGAATTTAACAACAGTAGT
GAGAACTTTAATCATAATACTAGTTAACTGGTAAAAGAATCTGAAAAGAC
AAAAATGGAGAAATCTCGTATATTAATAGGTTGTAAGAATAAATATTGAA
GTGTCCACATCTCCTGTGAAAACTATCAGACTTTATGAACCCACCCTGAA
ATACCAATAACATTTTTCATTCTTATAGGAGTAAAAATCTCAAATTTGTA
TGGAGGTACCATAGAATGAGTAGACAACTGGAACTAGAGCAGAAAGGAAA
ATCTGGAGACATCGTAATACCTGATTTCAACATACATCATGAGCCCCACA
GTAACCAGAACTCTATGATCACACCAACGAATGAGAAGAGTGATTTGAAT
ACTGATCTATGTATCTGCAGTTAACTGATCTTAAAAGACTTTCCAAAATC
TTATGTTATAGAACTGATATCATATTCAATGAATGATATAACGATAATTA
ATATCCATATGGAGGTGATTAAAATTTGATACTCTGTCTTTCTGGGCAAA
TTCAACTGAAAGTTGGTCAAAGACACTGATGCAATAACAAACCACTGAAA
ATACAGGAAAACACAACAGGGAAATATTTCATTGGTTTTGG
CCCCACGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGTAATACCGAA
TGGCTGAGAAACACCTGAAGGAATGTTCAACATCCTTAGTCATCAGGGAA
ATGAAAATCAACGCAACCCTGAGATTCCATTTCATTCCAGTCAGAATGGC
TAAGGTCAAAAACTCAGGTGACAGCAGATGCTGGTGAGGATGTGGAGAAA
GGGGAACACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTC
TGGAAATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGA
GGATCCCGCAATACCTCTCCTGGGCATATATCCAGAAGATGTCCCAACTG
GTAAGAAGGACACATGCTCTACTATGTTCATAGCAGCCTTATTTATAATA
GCCAGAAGCTAGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACA
GAAAATGTGGTACATTTACACAATGGAATACTACTCAGCTATTAAAAAAA
TGAATTTATGAAATTCCTAGGCAAATGGATGGACCTGGAGGGCATCATCC
TGAGTGAGGTGACCCAATCACAAAGGAACTCGCACAATATGTACTCACTG
ATAAGTGGATATTAGCCCAGAAACTTAGGATACCCCAGATATAAGATACA
ACTTTGCTAAACCCGTGAAATTCAAGAAGAACGAAGACCAAAGTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no453_g07.b1 MSMg01no453_g07.b1 CHROMAT_FILE:
MSMg01no453_g07.b1 PHD_FILE: MSMg01no453_g07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:15 2005
         (681 letters)



>mm_chr1_141444363_141445443
          Length = 1081

 Score = 1286 bits (665), Expect = 0.0
 Identities = 674/677 (99%), Gaps = 1/677 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccatttttttctgagatgtaactataagttcagtgttgttataagtaatttcaaa 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattccatttttt-ctgagatgtaactataagttcagtgttgttataagtaatttcaaa 264

                                                                       
Query: 65  aattaattcagctatgaatttaacaacagtagtgagaactttaatcataatactagttaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aattaattcagctatgaatttaacaacagtagtgagaactttaatcataatactagttaa 324

                                                                       
Query: 125 ctggtaaaagaatctgaaaagacaaaaatggagaaatctcgtatattaataggttgtaag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctggtaaaagaatctgaaaagacaaaaatggagaaatctcgtatattaataggttgtaag 384

                                                                       
Query: 185 aataaatattgaagtgtccacatctcctgtgaaaactatcagactttatgaacccaccct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aataaatattgaagtgtccacatctcctgtgaaaactatcagactttatgaacccaccct 444

                                                                       
Query: 245 gaaataccaataacatttttcattcttataggagtaaaaatctcaaatttgtatggaggt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gaaataccaataacatttttcattcttataggagtaaaaatctcaaatttgtatggaggt 504

                                                                       
Query: 305 accatagaatgagtagacaactggaactagagcagaaaggaaaatctggagacatcgtaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 accatagaatgagtagacaactggaactagagcagaaaggaaaatctggagacatcgtaa 564

                                                                       
Query: 365 tacctgatttcaacatacatcatgagccccacagtaaccagaactctatgatcacaccaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tacctgatttcaacatacatcatgagccccacagtaaccagaactctatgatcacaccaa 624

                                                                       
Query: 425 cgaatgagaagagtgatttgaatactgatctatgtatctgcagttaactgatcttaaaag 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cgaatgagaagagtgatttgaatactgatctatgtatctgcagttaactgatcttaaaag 684

                                                                       
Query: 485 actttccaaaatcttatgttatagaactgatatcatattcaatgaatgatataacgataa 544
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 actttccaaaaacttatgttatagaactgatatcatattcaatgaatgatataacgataa 744

                                                                       
Query: 545 ttaatatccatatggaggtgattaaaatttgatactctgtctttctgggcaaattcaact 604
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ttaatatccatatggatgtgattaaaatttgatactctgtctttctgggcaaattcaact 804

                                                                       
Query: 605 gaaagttggtcaaagacactgatgcaataacaaaccactgaaaatacaggaaaacacaac 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 gaaagttggtcaaagacactgatgcaataacaaaccactgaaaatacaggaaaacacaac 864

                            
Query: 665 agggaaatatttcattg 681
           |||||||||||||||||
Sbjct: 865 agggaaatatttcattg 881


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 681
Length of database: 1081
Length adjustment: 10
Effective length of query: 671
Effective length of database: 1071
Effective search space:   718641
Effective search space used:   718641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)