TTTTATCCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCTTTTTCTTTCTCGATCTGCACTAAGGACTGGATTATT
CAAGTGCAGAGAACACCACGGAAAGAGGAAGTTGCATTTTTCAGGCTCAG
CCATGTGCTCTTTAAAATGCTTGCTTCATGGCAGTCTAAGCTTGCACTGA
CAGTGTCTGGTCTGCCTGAAACACCCCAATAGAACTGTAGAAAGCACAGA
GTTCGGCAGCCTCTGCTAGACCTTTGGGAATCTTCTGGTCTGCACTGGTC
TGACTCAAAACAGCAGCATTAATGCTGCATTACTACTGTCTGCATGACTC
TTCTATTCAGCAAATGGAATATTCCAGGAAACACTAAAGTTATAGAAATA
TACAATCCTTCAGGCATAGGGAAAAAAAATTAAACGTACCTTTGTAAGAT
GTGGCTTTCTCTAAACTACTTGGCTTGTTTTCCCTGCCTGTAAGCAGTAA
GTGCTAAAAAGACCAAGGGGTTTTTGTGTTACTGTTATCCCTAGTTTAGT
TATACACTAGAAGCTCAGTGAGAAAAAGTCACAGGACTTGCCCAGGAACA
CACAGTAATGAGTGAAGAGATCAGGTTGCACAGCCTGGCAATCCCCTGCC
AACACACACTTCATAATCATATTTCATTCATGTGCCACAGGACAACATTT
TCCTTGAATGAGAGACAAGCTCATACCACAAAGATCCCATTAAGG

NNNCCCCCATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGTGAATCCATATGGCT
CTGGGCTTTCTTCAGGTGGGAGACTTTTATTACTACTTCAATCTCAAGAT
TTATTTAAATTATTTATTACACCTTTGCTTAAATTTTTGTATGCTATAGG
CACATTGAATTTCATTAATTTCCTTTATGATTCTCAATTTAATGAAATAC
AAGTTTTAAAGCTATATCCACATGGTTTTCCATATTTTGTGGGTATCTAC
AAGAGTGTCCCTTTTCATCGCAAATTGTATTTAGTTTTCTCTTTATTTTG
GAAAATTTGGCTAAGGGTTTGTTGGGTAAGTTTGTGTTTCCAAAACTCAA
CTCTTGTTTTGTTTATTCTTTCTACCATTTCCTTTCACTTTATTTCATTA
ATTCATGAACTTAATTTGAGTATTTCCCCTAGTCAACTCTTCAGGGGAGT
GGCTTACCTTGTTTTACTGAGGTGCTAGTGGGATTGCAAGCTGATAGAAC
CACTCTGGAAATCAGTTTGATGGTTCCTCAGAAAACTGAACATATTACTA
CCTGATGACCCAGCTATACCAGTCCTAGACATATACCCAGAAGATGCCCC
AACATTTAATAAGGACAAATGCTCCACTATGTTCATGACAGTCTTATTTA
TAATAGCCAGAAAGTAGAAAGAACCCAGTTGTCCCTCAACAGAG

Query= MSMg01no453_i11.b1 MSMg01no453_i11.b1 CHROMAT_FILE:
MSMg01no453_i11.b1 PHD_FILE: MSMg01no453_i11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:26 2005
         (663 letters)



>mm_chr1_41210958_41212019
          Length = 1062

 Score = 1230 bits (636), Expect = 0.0
 Identities = 657/664 (98%), Gaps = 2/664 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   actaaggactggattattcaagtgcagagaacaccacggaaagaggaagttgcatttttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 actaaggactggattattcaagtgcagagaacaccacggaaagaggaagttgcatttttc 259

                                                                       
Query: 61  aggctcagccatgtgctctttaaaatgcttgcttcatggcagtctaagcttgcactgaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 aggctcagccatgtgctctttaaaatgcttgcttcatggcagtctaagcttgcactgaca 319

                                                                       
Query: 121 gtgtctggtctgcctgaaacaccccaatagaactgtagaaagcacagagttcggcagcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gtgtctggtctgcctgaaacaccccaatagaactgtagaaagcacagagttcggcagcct 379

                                                                       
Query: 181 ctgctagacctttgggaatcttctggtctgcactggtctgactcaaaacagcagcattaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ctgctagacctttgggaatcttctggtctgcactggtctgactcaaaacagcagcattaa 439

                                                                       
Query: 241 tgctgcattactactgtctgcatgactcttctattcagcaaatggaatattccaggaaac 300
           |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tgctgcaggactactgtctgcatgactcttctattcagcaaatggaatattccaggaaac 499

                                                                       
Query: 301 actaaagttatagaaatatacaatccttcaggcatagggaaaaaaaa-ttaaacgtacct 359
           ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct: 500 actaaagttatagaaatatacaatccttcaggcgtagggaaaaaaaaattaaacgtacct 559

                                                                       
Query: 360 ttgtaagatgtggctttctctaaactacttggcttgttttccctgcctgtaagcagtaag 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ttgtaagatgtggctttctctaaactacttggcttgttttccctgcctgtaagcagtaag 619

                                                                       
Query: 420 tgctaaaaagaccaaggggtttttgtgttactgttatccctagtttagttatacactaga 479
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 620 tgctaaaaagaccaaggggtttttgtgttactattatccctagtttagttatacactaga 679

                                                                       
Query: 480 agctcagtgagaaaaagtcacaggacttgcccaggaacacacagtaatgagtgaagagat 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 agctcagtgagaaaaagtcacaggacttgcccaggaacacacagtaatgagtgaagagat 739

                                                                       
Query: 540 caggttgcacagcctggcaatcccctgccaacacacacttcataatcatatttcattcat 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 caggttgcacagcctggcaatcccctgccaacacacacttcataatcatatttcattcat 799

                                                                       
Query: 600 gtgccacaggacaacattttccttgaatgagagacaagctcataccacaaagatcccatt 659
           ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 800 gtgccacaggacaacattt-ccttgaatgagagacaagctcataccccaaagatcccatt 858

               
Query: 660 aagg 663
           ||||
Sbjct: 859 aagg 862


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1062
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1052
Effective search space:   686956
Effective search space used:   686956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)