Query= MSMg01no453_m01.b1 MSMg01no453_m01.b1 CHROMAT_FILE:
MSMg01no453_m01.b1 PHD_FILE: MSMg01no453_m01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:43 2005
(588 letters)
>mm_chr1_177650081_177651071
Length = 991
Score = 1006 bits (520), Expect = 0.0
Identities = 568/588 (96%), Gaps = 11/588 (1%)
Strand = Plus / Minus
Query: 5 gaattcacagacatccacctgtctgcctcccaagtactgggattaaagttgtgaaccaac 64
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 856 gaattcacag------acctgtctgcctcccaagtactgggattaaagttgtgaaccaac 803
Query: 65 cactgcctagcacacctgagacac--tatctccttcaagtccactatcctcagaggatca 122
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 802 cactgcctagcacacctgagacactttatctccttcaagtccactatcctcagaggatca 743
Query: 123 catactacttggctagcacctgtgttttatctgggaaattattcagatcaaccttttctg 182
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct: 742 catactacttggctagcacgtgtgttttatctgggaaattattcagatcaaccttttccg 683
Query: 183 tggcgactgccatgtaagtcacaatgacactctgagaaagacaccaaacatttctcagca 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 tggcgactgccatgtaagtcacaatgacactctgagaaagacaccaaacatttctcagca 623
Query: 243 gtcaaacctgagggatgaacccaaggctctgcaatccccttaccactaacgattttattc 302
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 622 gtcaaacctgagggatgaacccaaggctctgcaatccccttatcactaacgattttattc 563
Query: 303 cctaaaccacacagaaatgttttttgtgtttttggaaatatttggataatgcatagataa 362
||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct: 562 cctaaaccacacagaaatggtttttgtgtttttggaaacatttggataatgcatagataa 503
Query: 363 aacaaaacacaggaagaaaaagtggg-ggaggggagcagaaggagggggagaggccaaga 421
|||||||||||| ||||||||||||| || ||||||||| ||||||||||||||||||||
Sbjct: 502 aacaaaacacagcaagaaaaagtgggagg-ggggagcaggaggagggggagaggccaaga 444
Query: 422 ttccaaattacctggctgttgaagacagttattaatcctttctgagatgctgttatcaat 481
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ttccaagttacctggctgttgaagacagttattaatcctttctgagatgctgttatcaat 384
Query: 482 aaatccagctgtgggaccttcacaatgcatttgatcacatcgcgtcgtctactgcctgtc 541
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 383 aaatccagctgtgggaccttcacaatgcatttgatcacatcacgtcgtctactgcctgtc 324
Query: 542 aaaagcacacaagtaatgtcaactcccagaggtttga-aaaaaaaaaa 588
||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 323 aaaagcacacaagtaatgtcaactcccagaggtttgacaaaaaaaaaa 276
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 991
Length adjustment: 10
Effective length of query: 578
Effective length of database: 981
Effective search space: 567018
Effective search space used: 567018
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no453_m01.g1 MSMg01no453_m01.g1 CHROMAT_FILE:
MSMg01no453_m01.g1 PHD_FILE: MSMg01no453_m01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:43 2005
(635 letters)
>mm_chr1_177499648_177500682
Length = 1035
Score = 1158 bits (599), Expect = 0.0
Identities = 626/635 (98%)
Strand = Plus / Plus
Query: 1 attgtgtttagttgtggaaaattctttggtgtgtatgggggactgtactgataaaagaga 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 201 attgtgtttagttgtggaaaattctttggtgtgtatggggggctgtactgataaaagaga 260
Query: 61 aaacacattcagaaaaaatatttaataatgacttctctcaaagtacaaaaaggtgatcca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaacacattcagaaaaaatatttaataatgacttctctcaaagtacaaaaaggtgatcca 320
Query: 121 tgtattataggtccccttatcctcttattggaggtatgagaatccaaacgtagctaggta 180
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgcattataggtccccttatcctcttattggaggtatgagaatccaaacgtagctaggta 380
Query: 181 gtggtcttaattaccaatttaatggaatccttgtattgcctcaaggaagcttgtattcct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtggtcttaattaccaatttaatggaatccttgtattgcctcaaggaagcttgtattcct 440
Query: 241 cagaatgaatgtctttaggtcagtagaacacagggtcacaggaacatgagaaataaaatg 300
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagaatgaatgtccttaggtcagtagaacacagggtcacaggaacatgagaaataaaatg 500
Query: 301 tcaagctataaggaaatatctagtgtctccatttttctcccagataatgaaacttagagc 360
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcaagctataaggagatatctagtgtctccatttttctcccagataatgaaacttagagc 560
Query: 361 tgaatggcttggcttgtactgaagaaggtgaggtcctgaccagaatgttttgttttgttg 420
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 561 tgaatggcttggcttgtactgaagaaggtgaggacctgaccagaatgttttgttttgttg 620
Query: 421 tttggcttgttttttgtctccctatagatgacaaagttgtggttcatctgtgctaattta 480
||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 621 tttggtttgttttttgtctccctacagatgacaaagttgtggttcatctgtgctaattta 680
Query: 481 ttactttagttttatttaagcttcttttgaggccaggccaagtaggatgctaatagatag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttactttagttttatttaagcttcttttgaggccaggccaagtaggatgctaatagatag 740
Query: 541 catgtaactatctatttgtgtaaatgcttgaagtctgaactgaactgaaatccaagaccc 600
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 catccaactatctatttgtgtaaatgcttgaagtctgaactgaactgaaatccaagaccc 800
Query: 601 accactcccttgagtatatcccatgtacagatcag 635
|||||||||||||||||||||||||||||||||||
Sbjct: 801 accactcccttgagtatatcccatgtacagatcag 835
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1035
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1025
Effective search space: 640625
Effective search space used: 640625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
