BAC Information

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BAC

Clone NameMSMg01-453M10
Chromosome1 (Build37)
Map Location 63,578,773 - 63,578,934
singlet/doubletsinglet
Overlap geneAdam23
Upstream genePard3b, LOC667592, Nrp2, LOC100043070, A430093A21Rik, Ndufs1, Eef1b2, Gpr1, 1700039I01Rik, 4930431J08Rik, LOC667644, LOC100042638
Downstream geneGm215, Mdh1b, Fastkd2, 4933402D24Rik, LOC671842, OTTMUSG00000013918, Klf7, Ppia-ps1_583.1, LOC100043124
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-453M10.T7 (MSMg01no453_m10.b1)MSMg01-453M10.TJ (MSMg01no453_m10.g1)
ACCAG540709AG540710
length751733
length of high quality
(start - end)
693 (53 - 745)162 (102 - 263)
definitionCHROMAT_FILE: MSMg01no453_m10.b1 PHD_FILE: MSMg01no453_m10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:24:45 2005CHROMAT_FILE: MSMg01no453_m10.g1 PHD_FILE: MSMg01no453_m10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:24:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNCCACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGC
AAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCC
ACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCA
ACATAGTACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATC
AAGGGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGA
TGATATGATAGTATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCC
TAAACCTGATAAACAGCTTCGGTGAAGTAGCTGGATATAAAATAAACTCA
AACAAGTCAATGGCCTTTCTCTATACAAAGAATAAACAGGCTGAGAAAGA
AATTAGGGAAACAACACCCTTCTCAATAGTCACAAATAATATAAAATATC
TTGGTGTGACTCTAACTAAGGAGGTGAAAGATCTGTATGATAAAAACTTC
AAATCTCTGAAGAAAGAAATTAAAGAAGATCTCAGAAGATGGAAAGATCT
CCCATGCTCATGGATTGGCAGGATCAATATTGTAAAAATGGCTATCTTGC
CAAAAGCAATCTACAGATTCAATGCAATCCCCATCAAATTCCAACTCAAT
TCTTCAACGAATTGGAAGGAGCAATTTGCAAATTTGTCTGGAATAACAAA
A
NCCCTCAANNNTTTGTTNNTNNCCCCATGXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XATAAATGTGTTGCAGTGTCTGCTGAAGTGCTAAAAGGGTTTATATACAT
ATAAACTCGTATGATCAAAATGTTTGAGGAATCAGCACTTAGTTGTTATA
GCTGTAATTATACTGCTGGGGGCTGGTGGTTATGTGCTTATTATCTTCTG
TTCCCTGCCTGCCTCCTACTTGCTCCCTTTTGTTCATTCTCACTGTTGGG
TGGGGGCAAAGCGAGCAAAAACTTGAATTCTTTAAAATTAACCACCGAAA
AAACTTTGTTGCAAGGGTTCCGGGGGGTTAAATTATTCCCCAAAAGGCTA
TGGGGGGGTCTTTTTTCCCCCCCCAGTTTTTTCCCCAAAAAATAAAAAAA
ACTGGTGTTTTAAAAAAAAAAATTTTTGGGAATTTTTGTTGGGGGAAAAC
CCCCCCAAACATTTCTATTTTGGGGGTAATAAATTGGGGTGTTTTTTTTA
TTTTTCCCCCACTTATAATGTTTTTAACACCCGGTGTTTGTTGGGGAGAA
AAAAACCCCCCTTTCTGTTAGTGGTAAACAGAGAAAAAATCCTCCCCCCG
GGGAGAAAAAAACCCCCCCCTTTTTTTTTTTGTGGGTGGTTAAAAAACAA
CACACTTTTTCTTCTTTCTTTTTCTTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no453_m10.g1 MSMg01no453_m10.g1 CHROMAT_FILE:
MSMg01no453_m10.g1 PHD_FILE: MSMg01no453_m10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:45 2005
         (162 letters)



>mm_chr1_63578573_63579134
          Length = 562

 Score =  313 bits (162), Expect = 3e-90
 Identities = 162/162 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ataaatgtgttgcagtgtctgctgaagtgctaaaagggtttatatacatataaactcgta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ataaatgtgttgcagtgtctgctgaagtgctaaaagggtttatatacatataaactcgta 260

                                                                       
Query: 61  tgatcaaaatgtttgaggaatcagcacttagttgttatagctgtaattatactgctgggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgatcaaaatgtttgaggaatcagcacttagttgttatagctgtaattatactgctgggg 320

                                                     
Query: 121 gctggtggttatgtgcttattatcttctgttccctgcctgcc 162
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctggtggttatgtgcttattatcttctgttccctgcctgcc 362


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 162
Length of database: 562
Length adjustment: 8
Effective length of query: 154
Effective length of database: 554
Effective search space:    85316
Effective search space used:    85316
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)