Query= MSMg01no453_m18.b1 MSMg01no453_m18.b1 CHROMAT_FILE:
MSMg01no453_m18.b1 PHD_FILE: MSMg01no453_m18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:47 2005
(654 letters)
>mm_chr1_30837378_30838431
Length = 1054
Score = 721 bits (373), Expect = 0.0
Identities = 531/659 (80%), Gaps = 118/659 (17%)
Strand = Plus / Plus
Query: 1 ttgcgtttaagatgagactttgcagggcattttcgcctgaagtgacaacaactggcggag 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 201 ttgcgtttaagatgagactttgcagggcattttcgcctgaagtgacaacaactggcagag 260
Query: 61 aggaaataaaacgcagcaagattctgaagctccagggttggaagtggctcatccctaaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggaaataaaacgcagcaagattctgaagctccagggttggaagtggctcatccctaaag 320
Query: 121 ctgcctgatgaagtcatcagactttcaacttagcaccttaacagattaaagaagatctga 180
|||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 ctgcctgatgaagtcatcagactttcaacttaacacctt--------------------- 359
Query: 181 catgaaggctaatgcgtgccagagatggggaatctaatcagagactcctcacaatgtcag 240
||||
Sbjct: 360 -atga------------------------------------------------------- 363
Query: 241 ggccctaaacagctacacacatgtaagaatgtatggggatatctgatttaatgcatcaga 300
||||| ||||||||||||||||||
Sbjct: 364 ------------------------------------ggatacctgatttaatgcatcaga 387
Query: 301 caccaagaaaataatacttttgagcagttgaagtggaaatgtatgaaatagcaaaacgtt 360
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 388 caccaagaaaataatacttttgagcagctgaaggggaaatgtatgaaatagcaaaacgtt 447
Query: 361 gaaaatagttaagatccccacaagagaaatacaaagccacataatttgccattctagaca 420
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 gaaaatagttaagacccccacaagagaaatacaaagccacataatttgccattctagaca 507
Query: 421 tcaagatgcaaaactggagtaactaagacaacgtgacattgatgcaagaatagacaagca 480
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 508 tcaagatgcaaaactggagtaactaagacaacgtgacattgatgcacgaatagacaagca 567
Query: 481 gactaagagtacagagaagagacatgggactagtttcaaagggacacgaccatcagcagg 540
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 568 gactaagagtacagagaagagacatgggactattttcaaagggacacaaccatcagcagg 627
Query: 541 aagggctgtg-ta-ata---acacattcctgcagagacctgtaattgcatctgtgcccta 595
||||| |||| || ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 aagggatgtgctacatagtaacacattcctgcagagacctgtaattgcatctgtgcccta 687
Query: 596 aacaaaatacaagatatttttcagatgcacaaagagtttggttctttgtacaagggaca 654
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 aacaaaatacaagatatttttcagatgcacaaagagtttggttctttgtacaagggaca 746
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1054
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1044
Effective search space: 672336
Effective search space used: 672336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no453_m18.g1 MSMg01no453_m18.g1 CHROMAT_FILE:
MSMg01no453_m18.g1 PHD_FILE: MSMg01no453_m18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:47 2005
(663 letters)
>mm_chr1_31013141_31014203
Length = 1063
Score = 1214 bits (628), Expect = 0.0
Identities = 655/664 (98%), Gaps = 2/664 (0%)
Strand = Plus / Minus
Query: 1 gacttggctcagctcatttggtttgcatattccaatgtttctaatgttttttggaaacat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 863 gacttggctcagctcatttggtttgcatattccaatgtttctaatgttttttggaaacat 804
Query: 61 ctcacctcgttctccattttgataagaggcttaggccatgacttaccagaaacatcccta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 ctcacctcgttctccattttgataagaggcttaggccatgacttaccagaaacatcccta 744
Query: 121 ttgctgctattgctactgatgcaatcacagttcttggaaatacagagggaaaaaaagtta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 ttgctgctattgctactgatgcaatcacagttcttggaaatacagagggaaaaaaagtta 684
Query: 181 tgttctcagtgccctagacatgggttttatatccccgagtggtacccactttaagttacc 240
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 683 tgtactcagtgccctagacatgggttttatatccccgagtggtacccactttaagttaac 624
Query: 241 aaaggcataaagtatgccatcactctgccttcagtgactactgtccttcagacagcagca 300
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct: 623 aaaggcataaagtatgccatcactctgccttcagtgacttctgtccttcagacagtagca 564
Query: 301 gctgcaaaccctgggcattctcaggcacttctacacagcataaccatcctggtgcctcag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 gctgcaaaccctgggcattctcaggcacttctacacagcataaccatcctggtgcctcag 504
Query: 361 gagatctgaatgcttatcttgcaccctgcagatcccaattttatgaaaagaaaggggagt 420
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gagatctgaacgcttatcttgcaccctgcagatcccaattttatgaaaagaaaggggagt 444
Query: 421 ctaagaaagaagttttcagatttgactggctcatttcacgggatttctttccatccattc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ctaagaaagaagttttcagatttgactggctcatttcacgggatttctttccatccattc 384
Query: 481 ttttataaactggggtaatgtctttgatggaatcctcctagtgccagtgaaatacaatcc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 383 ttttataaactggggtaatgtctttgatggaatcctcctagtgccagtgaaatgcaatcc 324
Query: 541 ttatgttacattgactgtataaaggatgtcactgaagttgcatggagaaacaagctgtgt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ttatgttacattgactgtataaaggatgtcactgaagttgcatggagaaacaagctgtgt 264
Query: 601 tgctattgaggacttcccctggactctgnagg-aagggacacttctgtggccacatggat 659
|||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||
Sbjct: 263 tgctattgaggacttcccctggactctg-aggaaagggacacttctgtggccacttggat 205
Query: 660 agaa 663
||||
Sbjct: 204 agaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1063
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1053
Effective search space: 687609
Effective search space used: 687609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
