BAC Information

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BAC

Clone NameMSMg01-454D14
Chromosome1 (Build37)
Map Location 110,764,152 - 110,764,681
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC435640, EG626474
Downstream geneEG666508
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-454D14.T7 (MSMg01no454_d14.b1)MSMg01-454D14.TJ (MSMg01no454_d14.g1)
ACCAG541051AG541052
length7741,456
length of high quality
(start - end)
531 (74 - 604)---
definitionCHROMAT_FILE: MSMg01no454_d14.b1 PHD_FILE: MSMg01no454_d14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:25:21 2005CHROMAT_FILE: MSMg01no454_d14.g1 PHD_FILE: MSMg01no454_d14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:25:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAATCCGCGGA
ATTCTCCAANATTACTTCATATCTTGGCAAGCCATAACCATAGATTGGGC
AAATTTTGCAAATATTCTAACTTGCATTTCAACCTTATGTCACTTGTTAA
CTTGATGTTGTTCCTGGATGTATGTTCATTCTCCTTCACATTTCATGTGT
CTTTCTTACTTTGTCTGCTTTTTTATTCTTTTGTCTCTACCTACACACAT
AGCCAAATAATTGATCTGTCTATCCCTTATCTACCATCTAACCACAGGCT
TTAGATTTTTATTGACCTTTTAACTTGGGGAACAAGGTTACATAGCATCA
TTTGATGTATCTAAGGATCTCCTCCTCAGGGGCAACCATATCTTGGCAGG
GGGTGGGAAACAGTATTTATCATTTGAATACATTGCAGCATCTGAGCAAC
CCTCTACATTTATTGCCTTAGATTTAGGGGGAGAAACTGTTTTGATTTAG
TTAAACATGTTCTTTGAGCTTTTTCCTTGTATATTTCTCCTTATTCCATG
AAAAATTATATGTTATGAAAATATCATGATGTCCCAAATTGTTTCTTTGC
TTTGNTATGTTTAACTTTATTCATTTTTAGTGAATAAANTCTCTTTATCT
TGTCTTCATGAACAGATATCCTCTGGTCTTTTTTAACCCATTTGAAACAA
TCCTCTGAGCCTTTTTGTTTGACTTTGGGGAATCTGACATTACGAATTAT
TTTCATTGAATTTTTCTTTCAGGA
ACACACTCACAATAACCAACAGAGGGACAGACNGTGCAGCGCGTCTTCCT
CCAGAGACGGGAGCGNAGTGTTAACANAGCAAGTACTTTTCCCCAGGAGC
ATTCGTCTGTGTAAACCATCATATTCTTATATTTTTAGCGCGAGGCGCGT
GTACGTGATGTCTCTCAGTGCGACACGACACCGTCCTCTTTNAGTCGTCA
CTATACCACCGCGCCGCGAACAAATATAACGAGTATATATAAGGAAGAGC
AGAGCGCAAGTGATGCAAGTACGCACGCGACGTATGCACAGATTTCGCCG
TACTTGATATATATATATTTGTGCGACCAATAATACAGNTTCGGCTACTT
ATATTCAGCAAGCGAGTGCTGTAAGACAGATACAGTGTGCTAGAAATGAA
GTGCGGGGTGCGGAGAGAGAGGGCGCGAGTGAGAGATGAAGACATATATA
TCTCGACACCGACGTGCGCTGAGANAGGTTAGCACGCCCATACCCATCCT
CTGTATCAACTCAGCACCGACGGCGCTTNTATGTTCATATCAAGACGAGC
GTCCGACGCGGATCGGAGCATGAGTGTCTATCGTGACAGTAANTACTGCC
GTAATAACGTCNGATGCGTACAGTGACAGGCGGTCGGCATGATGACAGAT
ATCGCACGCGACGGTAATNAGTCCCGCCGCGGAGATACGCGTCTGAGCGA
TGTGTGCGTGACGAGTATTATTATAGTAGTCTCGCCTGCCTCGCCTGTCG
ACGAGCGACGATATAGCGCTATATAGATACGATACCGCGCCGTGTAGGGA
AAGATGNTAGAGAGAAAATCNGTTCTNGTATCGATTGCGAGATAGGAGAG
GGATGAGAGATGCGAGATGTCGNCGACAGCTACAGTAACAACAGAAGCAG
TACTTATGACAGTAGAACTGCTATACGCTGCGTCGCGTTTTATTATATCN
GCGACGCAAGAGAAGTAGAGTATGCAGCGCATGTGANGAGGAACGAGTTA
TGACATATAGTGTCATGTGNCGTCATCAGTCACGAGTTATGTTATTTATC
GCAGCGCGGCGCTGAAGACACGTAGTATTGACGCATTGTGATGAGTGTAT
ATCTGCGTCCNGTGCTGACGTGCGGTGGTACTATGCTCCCGCTTGGAGCG
CGTCACTGTCCGATCGACATCGANCANCTCTCATGATCTGCCGTTATACG
CGCGGCGCGGGCCATTTATTATATATCGCAGCGCGTGGCGCGCTCGTGAG
TGCTGTACTCGCGAGATGGTAGTACACTATCTGACAATCGCGCGCGCGCG
CTCGCGCATGTGTACTATATAACAATGCTGCTACGTACTACCTGCGACGA
TATCTGAGCGTCAGTAGGAAGCTGCGACTTAAAATCGTATATACGCGCCN
CGCCCGCGCACTAGATAAGATATAGCTCGGCATGTGTAGATTAGAGCATT
CATAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no454_d14.b1 MSMg01no454_d14.b1 CHROMAT_FILE:
MSMg01no454_d14.b1 PHD_FILE: MSMg01no454_d14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:25:21 2005
         (531 letters)



>mm_chr1_110763952_110764882
          Length = 931

 Score =  913 bits (472), Expect = 0.0
 Identities = 517/532 (97%), Gaps = 3/532 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttggcaagccataaccatagattgggcaaattttgcaaatattctaacttgcatttcaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttggcaagccataaccatagattgggcaaattttgcaaatattctaacttgcatttcaac 260

                                                                       
Query: 61  cttatgtcacttgttaacttgatgttgttcctggatgtatgttcattctccttcacattt 120
           |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct: 261 cttatgtcacttgttaacttgatgttgttcctgggtgtatgttcattctccttctcattt 320

                                                                       
Query: 121 catgtgtctttcttactttgtctgcttttttattctt-ttgtctctacctacacacatag 179
           |||| ||||||||||||||||||||||| ||||| || ||||||||||||||||||||||
Sbjct: 321 catgcgtctttcttactttgtctgctttcttatt-ttcttgtctctacctacacacatag 379

                                                                       
Query: 180 ccaaataattgatctgtctatcccttatctaccatctaaccacaggctttagatttttat 239
           ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||
Sbjct: 380 ccaaataattgatctgtctatcccttatctactgtctaaccacaggctttagatttttat 439

                                                                       
Query: 240 tgaccttttaacttggggaacaaggttacatagcatcatttgatgtatctaaggatctcc 299
           |||||  |||||||||||||||||||||||||||||||||  ||||||||||||||||||
Sbjct: 440 tgaccaattaacttggggaacaaggttacatagcatcattcaatgtatctaaggatctcc 499

                                                                       
Query: 300 tcctcaggggcaaccatatcttggcagggggtgggaaacagtatttatcatttgaataca 359
           ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 500 tcctcaggggcaaccatatcttggcagggggagggaa-cagtatttatcatttgaataca 558

                                                                       
Query: 360 ttgcagcatctgagcaaccctctacatttattgccttagatttagggggagaaactgttt 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ttgcagcatctgagcaaccctctacatttattgccttagatttagggggagaaactgttt 618

                                                                       
Query: 420 tgatttagttaaacatgttctttgagctttttccttgtatatttctccttattccatgaa 479
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 tgatttagttcaacatgttctttgagctttttccttgtatatttctccttattccatgaa 678

                                                               
Query: 480 aaattatatgttatgaaaatatcatgatgtcccaaattgtttctttgctttg 531
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 aaattatatgttatgaaaatatcatgatgtcccaaattgtttctttgctttg 730


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 931
Length adjustment: 10
Effective length of query: 521
Effective length of database: 921
Effective search space:   479841
Effective search space used:   479841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)