BAC Information

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BAC

Clone NameMSMg01-454P12
Chromosome1 (Build37)
Map Location 72,082,279 - 72,082,517
singlet/doubletsinglet
Overlap genenone
Upstream geneBard1, LOC667900, Abca12, LOC629101, Atic, Fn1, LOC100042814, Gabarapl2-ps1_652.1, LOC383528, LOC675667, EG667931, EG433319
Downstream geneLOC667937, LOC100043255, Mreg, Pecr, Tmem169, Xrcc5, March4, Smarcal1, Ankar, Rpl37a, Igfbp2, Igfbp5, LOC672187, LOC100042860, Tnp1, 1700027A15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-454P12.T7 (MSMg01no454_p12.b1)MSMg01-454P12.TJ (MSMg01no454_p12.g1)
ACCAG541619AG541620
length679773
length of high quality
(start - end)
---239 (73 - 311)
definitionCHROMAT_FILE: MSMg01no454_p12.b1 PHD_FILE: MSMg01no454_p12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:20 2005CHROMAT_FILE: MSMg01no454_p12.g1 PHD_FILE: MSMg01no454_p12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAATTTCGNCCTATAAANCACTTCGTACCATCGCGNAANNCCGTTCTAAC
TAAGCTANAACAAACTGAAAAAAAGGAAAGNCTTGTTTCACATNTTGTGT
TTTTTTGTTGTGTGGTGTGTAATTTTTTTTNCCGNTTCTTTTTTTTTTTT
TTTTTTTTTTTTTTTGAAGGGGACGCTAGAAGAGGAAACAAAAAATTTTT
TAAAAAAAAAAAAAAAAAAATAAATTAAAATAAAAAAAAAAAAAAAAAAA
AAATTTTTTTTTTTGGGGGCCCCGCCACAAAAAAACAAACAAATTTATAA
ACAAAAAAAAAAAAACCCCGNNNCCCCTTTCCTCCTTTATCTCCCTTCTT
TTTTTTCCCCCTCCCCCCCCTTCTCCTTTTTTTTTTTTTTTCCCCCCCNN
CCCCCCCTCTCCCTTACCCTTCCCTNTCCTCACTTTTTTTTCCAATCATC
CAATTTTCTCTCTCCCTTACCCCTCCCCTTTCTTCCCCCTTTACCATATT
TTTCTCCCCTCCCTCTTTTTCTCTCACCCCCCACCTTCCCTATCCTTTTT
TTTTTTTTTTTAAAAATCTCCCCCTCTCTACCATATCCTTCATTTCCCAC
ATCCCCCACCTCCTCCCCCCTCCCCTCCTCCTCACTCTCCTTCCCCTTTT
CCCCTCCTCCTTTCCTTTCTCCTAATTTT
CGATGCAGTGGGAGGCCTGGNGGNCGCCTGTTTTCAGACTTGAGGTGAAC
TATAGAAGTACAGAGAAATTCACAGTTTTCTATCAGTGCTCTGCTGTGTA
CTTGATGCAAGCACAGGCATTTCAAAACTCACTAAGAAGTCATTTTCTTT
TTCTTTTTCTCTCTCCTGCTGCCTGGTCCTAGAAGAACTGGATACATCTT
TTTTTTTTTTTTTTCTGCTTCACCTTTATATGTGATCAGTCCATTGTATT
TTGTTCTAGTTGCAGGAATAGGTTAAAAAGAGAAAGAGGTATGGGAGAAA
GTTTATGGTTTCCTGNTACACTTGGGTATGTTTGGACCCACAAGTGGGGA
AAATGTATTTCTAAAAGACAGAAGAATCTTGGTATATATGCAAGCTTGAA
CAAAGATGATGCCCTCTTACCCCTTAGCGTGGAGGAGATATATCATAACT
CACAATGTCTACCTTCTAGAGCAATTGACAATCTGGGTCCCTCAGGGCTT
ACACTTGAGACTTGAGGCAATAGATCACTGGGAACATGAGGCAGGGTTAC
CGTGATATCTATTCCAAAAGGGAGGGAAAAAATTCCCTTTTCCTTCTTCC
CCCTCCCTCTGTGGCGCCTTTCCAGGGCCCCCCCCCCGGCCCGTTCTTTT
TAAACAAAAAACAAAAGGGGGAATCCCCGAAAACCCCCCTTGGGTTAAAA
ATGGGGGTTTATGAGATTCCCCAAAAAGGGAGATTTTTTCAAGGCGCCCC
TGTGGGGAAATGGGGGGGTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no454_p12.g1 MSMg01no454_p12.g1 CHROMAT_FILE:
MSMg01no454_p12.g1 PHD_FILE: MSMg01no454_p12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:26:20 2005
         (239 letters)



>mm_chr1_72082079_72082717
          Length = 639

 Score =  424 bits (219), Expect = e-123
 Identities = 234/239 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagttttctatcagtgctctgctgtgtacttgatgcaagcacaggcatttcaaaactcac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 439 cagttttctatcagtgctctgctgtgtacttgatgcaagcacaggcatttctaaactcac 380

                                                                       
Query: 61  taagaagtcattttctttttctttttctctctcctgctgcctggtcctagaagaactgga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 taagaagtcattttctttttctttttctctctcctgctgcctggtcctagaagaactgga 320

                                                                       
Query: 121 tacatcttttttttttttttttctgcttcacctttatatgtgatcagtccattgtatttt 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||  | |||||
Sbjct: 319 tacatcttttttttttttttttctgcttcacctttatatgtgatcagtccaaggcatttt 260

                                                                      
Query: 181 gttctagttgcaggaataggttaaaaagagaaagaggtatgggagaaagtttatggttt 239
           ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 259 gttctagttgcaggaataggttaaaaagaaaaagaggtatgggagaaagtttatggttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)