BAC Information

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BAC

Clone NameMSMg01-455H14
Chromosome1 (Build37)
Map Location 95,092,257 - 95,092,527
singlet/doubletsinglet
Overlap geneE030010N08Rik
Upstream geneLOC100040419, LOC665883, Ndufa10, Olfr1416, Olfr1415, Olfr1414, Olfr1413, Olfr1412, Olfr1411, Olfr1410, Olfr12, Myeov2, Otos, Gpc1, Ankmy1, Dusp28, LOC100040511, Rnpepl1, Capn10, Gpr35, Aqp12, Kif1a, Agxt, 2310007B03Rik
Downstream geneSned1, Mterfd2, LOC665966, Pask, Ppp1r7, Tmem16g, Hdlbp, Sept2, Farp2, Stk25, Bok, Thap4, Atg4b, Dtymk, Ing5, D2hgdh, Gal3st2, LOC100041596, EG666009, EG619597, Neu4, Pdcd1, LOC666012
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-455H14.T7 (MSMg01no455_h14.b1)MSMg01-455H14.TJ (MSMg01no455_h14.g1)
ACCAG542005AG542006
length7411,171
length of high quality
(start - end)
422 (120 - 541)---
definitionCHROMAT_FILE: MSMg01no455_h14.b1 PHD_FILE: MSMg01no455_h14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:00 2005CHROMAT_FILE: MSMg01no455_h14.g1 PHD_FILE: MSMg01no455_h14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:00 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CATAATTTGCGGCCGCTAAAGGAGTCACATACAAAATAGGATNCGNGGAA
TTCANCATCCCACTCCCAATGACCGNCATAATTTCACTTGTGTGCATGTG
CTCAAGAATAGTGAGAAATGGGTGTGCAAAGGCTTTCACGAGTTTTGTGT
ATTACAGCCTAAGCCAGAAACAGAACAGGTGTCCAACAATAGGTGTGTGA
GAAAGTAGTCGTGTTTATTCACACTGTGATGTGGAGTTATGTGCCTAAGC
CAAAAGTTATGGTACATGTAACTACTCAAAGAGTCTTAAAGAGTACATAT
ATAGAGAATCTTGGTTCAAGTTATCCGCCCAGCCAGTGTAGGGTCCCCCA
TGTTGGAACAGAGGCTGCTGGGGTCTTAGACATTTGGGCCCCACTGTGGA
TTGTGAGGGAGGCTTCTGGACCGGTAACCATGTTCTCATCCCAGGTGCAC
ACACCACTGTCAAACTCATTGGTCTGCCTGTTACCCACACTGCATGTTAA
TTATACTTTAACAAAAATGGAGGAATGGTGGCAAGAATAAGGTGAGGGGG
ACCTGAGAATGGAAAGAGTTGATGCTTTCCCACAAGAGACATGGGTGCCT
GGACATCCCTGGAAGTCTAAGACCCAATGGAGACAGGTTTTCCACACAAG
ACACTCTGTAAAAGACAAAAATTATTTTCACTCCGGCCATACGGGNTTGA
TTTCTTCTCTAACCACATGGCAGAGGAATTGACCTGGAGAA
TGCATAGAGTATGGAGGCGCCGGCGCGTTCCTCCCTCTCTCCCATAATTG
ATGTTTATATTATCACTGNATATATCACGCCCAGGCCGTTGCTGCCATAG
GAACAGTAGCGCGCCCGCCTATATCCCATCATAGTGGTGGTATCGCTGCG
TTGACGCGCGGAAGAGGNTCNCCATATTGACTATTCACGCCTCTCGGTCA
CTCGTTCCGCTGCCCTTGCCAGGTGATTGTAGTACTTCGCGTAGGACTGT
AGTCGAAGAGGCCAGCACACTCGCGCGCGTATACACTCGACGATAATTCT
GTTCTCTTTCCTGATTCCTTTACGGTTTCTGTCCGCTCTCTATCGGCATT
GAACCACACCGTGTAAATGTATTAATAGACACCCGCGGGAGTATACGGGG
GTATGAAGAGTATCGCGGGGGAGTTGAGGGCGCGGTGTGTGGTGTATGTC
GGCAGTTCAATGTAAACGCCGTGTGGTCATTTGCGAGTGTTTAGGCGCGA
GTTAGTTGCGAGTCTCGTTGTTTGTACGCTCCTGCGCGTTTATTATGGGC
CGGCTGACCGCCGGCGTGCGCAAAGCGAGGTGACTATGTCCATCACCCCT
AACGGAGATATATATTACGACGGCACCCCTGTACCCCATTTCTGGAACGC
AGTGATGCACGTCATTCGACTCGAGACGCTCACGCCACAGCTACATCACG
CTATATCGCCTGCTCCTACCTTAGTGCGTGATGGCCTAGCGATATGGGCT
GATTATCCGGTGTTTGCCGCGATGATACGAGTAAATGGTAGGCGAGTAGC
GGCACAAGCGAGCATATTGTATCACGATCAGCGCACCGGCCGTATATGTA
ATTGCTTATAAGGCGGCGAGTGCTACGCGATGGCGTGATATATAAGGATT
AGGCGCTCAAAGTCTAGCGCGGCCGACAGATTATGATGTGCTAATGTAGT
ATGATACGCCGAGCCGCACGAGAACGCGCCGAGCACTATGATATCTCGAT
ATTGTAAGTCGCTCCCAGCCGTATCCTATTAGCGTCTCTTATATACGTCC
CGCGTGTTGAGGCGGTGTGTGGATCGGTGTGTGATGTAGAGCGAGTGGTG
AGTCGCGACACGACTTGATAGCATGATTGAGGCAGGCGAATGTGTGTGTG
GACATAGAGAGACACGACGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no455_h14.b1 MSMg01no455_h14.b1 CHROMAT_FILE:
MSMg01no455_h14.b1 PHD_FILE: MSMg01no455_h14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:00 2005
         (422 letters)



>mm_chr1_95091906_95092727
          Length = 822

 Score =  501 bits (259), Expect = e-146
 Identities = 268/271 (98%)
 Strand = Plus / Minus

                                                                       
Query: 152 actactcaaagagtcttaaagagtacatatatagagaatcttggttcaagttatccgccc 211
           ||||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct: 622 actactcgaagagtcttaaagagtacatatatagagaaacttggtacaagttatccgccc 563

                                                                       
Query: 212 agccagtgtagggtcccccatgttggaacagaggctgctggggtcttagacatttgggcc 271
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 agccagtgtagggtcccccatgttggaacagaggctgctggggtcttagacatttgggcc 503

                                                                       
Query: 272 ccactgtggattgtgagggaggcttctggaccggtaaccatgttctcatcccaggtgcac 331
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ccactgtggattgtgagggaggcttctggaccggtaaccatgttctcatcccaggtgcac 443

                                                                       
Query: 332 acaccactgtcaaactcattggtctgcctgttacccacactgcatgttaattatacttta 391
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 acaccactgtcaaactcattggtctgcctgttacccacactgcatgttaattatacttta 383

                                          
Query: 392 acaaaaatggaggaatggtggcaagaataag 422
           |||||||||||||||||||||||||||||||
Sbjct: 382 acaaaaatggaggaatggtggcaagaataag 352


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 822
Length adjustment: 9
Effective length of query: 413
Effective length of database: 813
Effective search space:   335769
Effective search space used:   335769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)