BAC Information

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BAC

Clone NameMSMg01-455J21
Chromosome1 (Build37)
Map Location 60,804,062 - 60,950,193
singlet/doubletdoublet
Overlap geneCd28, LOC667555
Upstream geneB430105G09Rik, LOC100043007, Bmpr2, Als2cr13, LOC100042496, Ica1l, Wdr12, Carf, Nbeal1, Cyp20a1, Abi2, Raph1, LOC100043027, LOC100042533, Eif4a-ps4
Downstream geneRpl18-rs8, Ctla4, LOC100043049, Icos, LOC433313, LOC100042566, Pard3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-455J21.T7 (MSMg01no455_j21.b1)MSMg01-455J21.TJ (MSMg01no455_j21.g1)
ACCAG542115AG542116
length723733
length of high quality
(start - end)		564 (69 - 632)532 (77 - 608)
definitionCHROMAT_FILE: MSMg01no455_j21.b1 PHD_FILE: MSMg01no455_j21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:11 2005CHROMAT_FILE: MSMg01no455_j21.g1 PHD_FILE: MSMg01no455_j21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:11 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,804,062 - 60,804,625)(60,949,662 - 60,950,193)
sequence
NTTCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAGCGATTGCCAAGAAGAATCCTGAAGTAAGCACAAAAGCTGGTA
TAGACACCAGTAAGTTTCCTTTTACTGTTGGTTGAAATATGTTTATTTAG
GTTAAAATCCTTCAAGTTCCCAATAGCAATGGCAAGGAGGCTATATATTT
ATCAATTAGAAAGTTCTTACCCTAAACAACCTTTGGTTCTCACGAGTAAG
AGCTATTTATTGTCATAAACTCCATTCCAAATGAAGAGACCATTGGAAGG
AGGCCATCTATTGAAGATAATGTTCAATAATTTCTCCAGAGGATGCAGGT
CTCCAGTATTTGGCAACACATATTTACAGCTAAAGAATCTTTAAAATTTA
TGTTTAAAGGTTTCTGTATATCATGTTTAAGGGATCTTAACTTTCTTTTA
AAGGAATACTTAAGACACCTTAATTTACTAGATAGTAAAGCCTTACCCTT
GTTGAAAGTCATGCAACATTAGTGATTTTACACAGAATGCTTTTCTGATG
CCCTCTGTGGACAGCCATTTGTTATAAACTCATGTATTTTCTTTGGAAAC
TTTTTGGGTTGGACTCAAAGCTTTGTACGTTTCACTGTTTAGAATCTTTA
CAGGGGTTAGCTAAAAGAGAAGTTGGCAAGTTCACATGTGTGCAGGTCGT
TAGTTTTATTTACCTTACGACAG

TTCGATGATANTNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTAAACTCCTCTATGTTCTGGTTCC
ATTACACTCTTGAAACCCAAGTCAATTTTGTGAAGAAGAAAAAAAAAGTT
CATAAAACTGGGCTTGGATCCTCACAAAATTGACCTAGTTATAATCTGCA
GTTGAAGTATATTCAGTGTTAACTCAGGGTGCACTTCAAACAGCAGAAGT
GAAACTCAGTGTGTGCATGTGGATAAGAGGTGGAGGGAAACATTATTATG
TGATGGACTTATTAACCCATGAAAAAATTATTAAGTGACTAATGTATCAG
CCCAAACCCTGGACAAAGAGTGGACATAACCAGCTGAAAAATATTTCCAG
ATCCACGACCCTAGAAACTCCTCAAAGATCATAATTCTAAAATAACTTTT
CTGATTAAGTTCAAACTTTCCAAGAACATTCACTCTTTATCTGAAACTAA
ATCATGAGAAATTCCAAACTAAAAGTCACTGTAAACCACTTACATGAGAA
CTGTATTTTCACATTGGAACTATAGGATAAACTCTGTCAGTGTGATCATG
AATCAAAAAGGCTGATCCCAGCACACCTCCCCTGAAAAAGAAGAGATTAN
AAAGAAGAGCGGGGAGAAGGAAAACAGAGAAGGAGAAATAAAAAGGAGGT
AAAAAAGAGAAAGGTTTTTATTTATTTTTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no455_j21.b1 MSMg01no455_j21.b1 CHROMAT_FILE:
MSMg01no455_j21.b1 PHD_FILE: MSMg01no455_j21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:11 2005
         (564 letters)



>mm_chr1_60803862_60804825
          Length = 964

 Score = 1067 bits (552), Expect = 0.0
 Identities = 561/564 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaagaatcctgaagtaagcacaaaagctggtatagacaccagtaagtttccttttactgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaagaatcctgaagtaagcacaaaagctggtatagacaccagtaagtttccttttactgt 260

                                                                       
Query: 61  tggttgaaatatgtttatttaggttaaaatccttcaagttcccaatagcaatggcaagga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggttgaaatatgtttatttaggttaaaatccttcaagttcccaatagcaatggcaagga 320

                                                                       
Query: 121 ggctatatatttatcaattagaaagttcttaccctaaacaacctttggttctcacgagta 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 321 ggctatatatttatcaattagaaagttcttaccctaaacaacctttggttctcatgagta 380

                                                                       
Query: 181 agagctatttattgtcataaactccattccaaatgaagagaccattggaaggaggccatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agagctatttattgtcataaactccattccaaatgaagagaccattggaaggaggccatc 440

                                                                       
Query: 241 tattgaagataatgttcaataatttctccagaggatgcaggtctccagtatttggcaaca 300
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tattgaagagaatgttcaataatttctccagaggatgcaggtctccagtatttggcaaca 500

                                                                       
Query: 301 catatttacagctaaagaatctttaaaatttatgtttaaaggtttctgtatatcatgttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 catatttacagctaaagaatctttaaaatttatgtttaaaggtttctgtatatcatgttt 560

                                                                       
Query: 361 aagggatcttaactttcttttaaaggaatacttaagacaccttaatttactagatagtaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aagggatcttaactttcttttaaaggaatacttaagacaccttaatttactagatagtaa 620

                                                                       
Query: 421 agccttacccttgttgaaagtcatgcaacattagtgattttacacagaatgcttttctga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agccttacccttgttgaaagtcatgcaacattagtgattttacacagaatgcttttctga 680

                                                                       
Query: 481 tgccctctgtggacagccatttgttataaactcatgtattttctttggaaactttttggg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgccctctgtggacagccatttgttataaactcatgtattttctttggaaactttttggg 740

                                   
Query: 541 ttggactcaaagctttgtacgttt 564
           ||||||||||||||||||| ||||
Sbjct: 741 ttggactcaaagctttgtatgttt 764


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 964
Length adjustment: 10
Effective length of query: 554
Effective length of database: 954
Effective search space:   528516
Effective search space used:   528516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no455_j21.g1 MSMg01no455_j21.g1 CHROMAT_FILE:
MSMg01no455_j21.g1 PHD_FILE: MSMg01no455_j21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:11 2005
         (532 letters)



>mm_chr1_60949462_60950393
          Length = 932

 Score = 1013 bits (524), Expect = 0.0
 Identities = 530/532 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   taaactcctctatgttctggttccattacactcttgaaacccaagtcaattttgtgaaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 taaactcctctatgttctggttccattacactcttgaaacccaagtcaattttgtgaaga 673

                                                                       
Query: 61  agaaaaaaaaagttcataaaactgggcttggatcctcacaaaattgacctagttataatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 agaaaaaaaaagttcataaaactgggcttggatcctcacaaaattgacctagttataatc 613

                                                                       
Query: 121 tgcagttgaagtatattcagtgttaactcagggtgcacttcaaacagcagaagtgaaact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 tgcagttgaagtatattcagtgttaactcagggtgcacttcaaacagcagaagtgaaact 553

                                                                       
Query: 181 cagtgtgtgcatgtggataagaggtggagggaaacattattatgtgatggacttattaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 cagtgtgtgcatgtggataagaggtggagggaaacattattatgtgatggacttattaac 493

                                                                       
Query: 241 ccatgaaaaaattattaagtgactaatgtatcagcccaaaccctggacaaagagtggaca 300
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 ccatgaaaaagttattaagtgactaatgtatcagcccaaaccctggacaaagagtggaca 433

                                                                       
Query: 301 taaccagctgaaaaatatttccagatccacgaccctagaaactcctcaaagatcataatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 taaccagctgaaaaatatttccagatccacgaccctagaaactcctcaaagatcataatt 373

                                                                       
Query: 361 ctaaaataacttttctgattaagttcaaactttccaagaacattcactctttatctgaaa 420
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 372 ctaaaataacttttctgattaagttctaactttccaagaacattcactctttatctgaaa 313

                                                                       
Query: 421 ctaaatcatgagaaattccaaactaaaagtcactgtaaaccacttacatgagaactgtat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 ctaaatcatgagaaattccaaactaaaagtcactgtaaaccacttacatgagaactgtat 253

                                                               
Query: 481 tttcacattggaactataggataaactctgtcagtgtgatcatgaatcaaaa 532
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 tttcacattggaactataggataaactctgtcagtgtgatcatgaatcaaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 932
Length adjustment: 10
Effective length of query: 522
Effective length of database: 922
Effective search space:   481284
Effective search space used:   481284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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