BAC Information

Click to search

BAC

Clone NameMSMg01-455K18
Chromosome1 (Build37)
Map Location 181,912,535 - 181,912,771
singlet/doubletsinglet
Overlap geneCdc42bpa
Upstream geneSmyd3, LOC666354, LOC433941, Tfb2m, LOC100040874, 9630058J23Rik, Sccpdh, Gm1305, Ahctf1, LOC100040914, LOC100042190
Downstream geneCabc1, Psen2, EG277333, Itpkb, 6330403A02Rik, Gm821, Parp1, Lin9, Mixl1, LOC666431, Acbd3, H3f3a, BC031781, Lefty2, Pycr2, Lefty1, Tmem63a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-455K18.T7 (MSMg01no455_k18.b1)MSMg01-455K18.TJ (MSMg01no455_k18.g1)
ACCAG542157AG542158
length807706
length of high quality
(start - end)
33 (86 - 118)237 (46 - 282)
definitionCHROMAT_FILE: MSMg01no455_k18.b1 PHD_FILE: MSMg01no455_k18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:15 2005CHROMAT_FILE: MSMg01no455_k18.g1 PHD_FILE: MSMg01no455_k18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCGATAGANNNCCNCCCCNAANACAACCCACTATTCCAACAGGATCCGC
GNNAANCATTTGTCCCTTAACANAGGNAAAGAANNAAAATAAATGCTTTC
TATGGNGNATTGAACAGAGCCACAGNTCTGGGGAAATTACCAAACACGTG
AAAAGCCTGAANGAATCTGGCTGTATGNNATTTTCTGTCCTTANCTGTCC
ACCTCTANGGACAAGAAAGNNTCTGGNCCNGAACCNAAAAAACCCNAAAG
GGTTAAGGCGGGTTTTGCCCCGTGTGCAACCCNNNATTCCTNCTTGTNNC
TNNNNNNCCTNNNNNTTTTTTTTTGNNNNTGTGTGGGTGGTGTCGGGGGN
NGGTCTGCGTCATTGGGGGGGGGGGGNCTNNNNNNNNNNNNNNNNNNTGT
GTNNNNGNNNNNNTAATTTTTTTNTTTTNNNNNNNNNNNNNNNNNNNNTT
TNNNTTTTTTTTTGTTTTGTGTTTTTGTGNNTTTTNNNNTTTNNNNNNNN
NNNNNNTNNTTTNTNNNNNNNNNNNNNNTNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNTNNNNNNTNNNNNNNTNNNNNNNNNNNTTTTN
NNTTTNNNNNNNNNNNNNNNTTNNNNNNTTNNNNNNNNNNNNNNNNNNTN
NNNNNTTTTNTNNTTTTNTNNNTTNNTTTTTTTTNNNNNTTTNTNNNTNT
TTTTTTTTNNNNNNNNNNTNNTNNTNTTTTTNTTTTTTTTTTTTTGTGTT
TTGTTTG
GTTCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACTT
CTCTTACTAAAAACACATAAATCCCAAGTTTTTGGAAGAGCTTAGCCACT
AAGACACAGTTTAAGGGGTAGGAATGCTGCTGTGTGACAGGAAATAGAGG
AAGGAGAGCAAACAGGGGACAGAGGGAGACACGGAAATAGGAGGAGATGG
GTGGAATCCACTTTATAAAAACCTTAGAGCTTGGCTTTACAGCAAGCCTG
TTGTCTGTACCTCCTAAAACAGCTGACCAGAGTTTTTTCTCATGAGGTAG
GGAGGTAGATAGATGCCAAGTGGGGTAAGGAGCAAGGGCAAAGACTCCAG
TGGCCACATTGCAATGTTATTCTTTCATTCTATTCTTCACCAGAGCTGGG
ATCCAGGAGTAGACACCCTGCCAATGTTATCCCAATCAGTTTCTGTTTCT
CCCAATTGTAAGAAACAGTAGGAGTTACAAGCAGGAGTCTCGGGAGATGC
ACAGGAAATTGCAATTGATCTTACATGTACAACATCCATGTGCAAGTTTC
ATCTGACTGACACCTATATAGAGATAATGCCATTCTTCGGGGTAACGAAT
ACCTCTTCCTGCCATCATTTGTTGAATTTTTTTCCTACGATATTTCGCTT
TTTCTTCTTATCTTAATTCTCATATAATTCTTTTTTACTGATATAACACG
GATATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no455_k18.g1 MSMg01no455_k18.g1 CHROMAT_FILE:
MSMg01no455_k18.g1 PHD_FILE: MSMg01no455_k18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:15 2005
         (237 letters)



>mm_chr1_181912335_181912971
          Length = 637

 Score =  435 bits (225), Expect = e-126
 Identities = 234/237 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tacttctcttactaaaaacacataaatcccaagtttttggaagagcttagccactaagac 60
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 tacttctcttactgaaaacacataaatcccaagtttttggaagagcttagccactaagac 378

                                                                       
Query: 61  acagtttaaggggtaggaatgctgctgtgtgacaggaaatagaggaaggagagcaaacag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 acagtttaaggggtaggaatgctgctgtgtgacaggaaatagaggaaggagagcaaacag 318

                                                                       
Query: 121 gggacagagggagacacggaaataggaggagatgggtggaatccactttataaaaacctt 180
           |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 317 gggacagagggagacagggaaataggagaagatgggtggaatccactttataaaaacctt 258

                                                                    
Query: 181 agagcttggctttacagcaagcctgttgtctgtacctcctaaaacagctgaccagag 237
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 agagcttggctttacagcaagcctgttgtctgtacctcctaaaacagctgaccagag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 637
Length adjustment: 9
Effective length of query: 228
Effective length of database: 628
Effective search space:   143184
Effective search space used:   143184
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)