BAC Information

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BAC

Clone NameMSMg01-455L04
Chromosome1 (Build37)
Map Location 63,996,945 - 64,157,972
singlet/doubletdoublet
Overlap geneOTTMUSG00000013918, Klf7
Upstream geneA430093A21Rik, Ndufs1, Eef1b2, Gpr1, 1700039I01Rik, 4930431J08Rik, LOC667644, LOC100042638, Adam23, Gm215, Mdh1b, Fastkd2, 4933402D24Rik, LOC671842
Downstream genePpia-ps1_583.1, LOC100043124, Creb1, 2310038H17Rik, Ccnyl1, Fzd5, 9430067K14Rik, LOC667245, LOC100043141, 4921521F21Rik, LOC667276, Cryge, Crygd, Crygc, Crygb, LOC654356, Cryga, D630023F18Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-455L04.T7 (MSMg01no455_l04.b1)MSMg01-455L04.TJ (MSMg01no455_l04.g1)
ACCAG542177AG542178
length742746
length of high quality
(start - end)
634 (45 - 678)623 (75 - 697)
definitionCHROMAT_FILE: MSMg01no455_l04.b1 PHD_FILE: MSMg01no455_l04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:17 2005CHROMAT_FILE: MSMg01no455_l04.g1 PHD_FILE: MSMg01no455_l04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:17 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,996,945 - 63,997,574)(64,157,350 - 64,157,972)
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCAGGTATCCCAGAATAACATGAAAAACCTCTCTGGACACTGAGAC
ACTTACATTTCTCCCCTATGGTGACATACTTTGTTGCCTCTGATAGGACT
TTTCAGTGACCGGGTATTACCAATATTCTCTCCTTTAACTCCTAGTCTCC
TGGCACTCTGTTATTCTGGAATCCAAATGGTATCACTAAAAAGGATTTTA
CCTTTCAGGAAAGACAGAGAATGGAAGGCTGGGTCCCGTAAGGGAAAATG
ACCAAGTGCAGATGAAAGTGTCTGTACACATATCACAGTGGTCCCCTCCA
CATCCCTGCCTGCTCAGTCTCCACACACGTATACTAAGATTAATTCGTCA
CCAATGTCATGAGAAAGATAACATGTCTCTCTCCTGTAAGAACCTCTATT
GGCCTCTTCCCTGTTTTTGCCTCTACTGGAATTTTCCCATGTATATCTCT
GGTTTTCTGCAAGCTAGTTCTACATTCCTCTCAGAAAGCTGGGGTCTCTG
TATCACATGGGCACATCTAGCATAAAGCAAGAGTGGGTTATCAATGGCTT
CTTAAATGTTATTTCAGATAAAGAGGGGAAAAAAGAGGTAGTAAGTAAGA
TCGTTGTTTGAAGTTATCCAAATAAATCACAGCCAAAGAGAAGATGAAAG
TTAGAAGTCATAATCCGGCCAGAAGGCATTAGATGGCCTGGG
ATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAATGGAATGGTCATCGTCTTGTTGCT
TATTTTTGGAGAGGCAGCAGATGTGCACAATCTACAAAAGAACAGAAATA
GATTCTACCTAGCTATACATTTTGAGCTTTTATGTTTTATTCACCTGGCA
CTGTAGTGGCTGCTCGAGGGGTACAGCTCCTCCTAGGGCATGGGAGGTCT
GTGAGGAGGCGGTGTGGGTAGCAGCTCTCCTGTGAACCATAGGAGATCCT
GCTCAGTGTTGGATCGAGTCACTGCGTTCTGCACTCAAAACCTGTCAGTC
CTTAGCTGTCTGTCTTCCCCTGCGACTCAAGGTTTGTACTTCCTTTACTA
CTGACCAAGAGATAGTTTATTCCATGATAAAGAGTTTCATATTTGTTTAT
GAGCATCTCCACAAGCAGATATATTGAAGTTAAAAGTTCTGAGGGGCTCA
TGGCCTCTTGTGTAACTGAGAAGCAGGCAAATATTACAGAATTTCCTACT
CAGGGGTGAGAAACTTGAGGTGGAGATGATGAAGCCAGTTATCTTACAGT
GGCTGAACAGTAAACAAGTTGCAAAAGTGGTGTAAGAGTATGCCTGCGTC
TGCCCTTCTTGCTTCTGGTTACTATTCTTACCATCGTACAAAACATCAAA
ATAATACTAATACTCGTCAGATACTTCCCAGAGATTATCTCCTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no455_l04.b1 MSMg01no455_l04.b1 CHROMAT_FILE:
MSMg01no455_l04.b1 PHD_FILE: MSMg01no455_l04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:17 2005
         (634 letters)



>mm_chr1_63996741_63997774
          Length = 1034

 Score = 1172 bits (606), Expect = 0.0
 Identities = 624/630 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcaggtatcccagaataacatgaaaaacctctctggacactgagacacttacat 64
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcaggtatttcagaataacatgaaaaacctctctggacactgagacacttacat 264

                                                                       
Query: 65  ttctcccctatggtgacatactttgttgcctctgataggacttttcagtgaccgggtatt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttctcccctatggtgacatactttgttgcctctgataggacttttcagtgaccgggtatt 324

                                                                       
Query: 125 accaatattctctcctttaactcctagtctcctggcactctgttattctggaatccaaat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 accaatattctctcctttaactcctagtctcctggcactctgttattctggaatccaaat 384

                                                                       
Query: 185 ggtatcactaaaaaggattttacctttcaggaaagacagagaatggaaggctgggtcccg 244
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 385 ggtatcactaaaaaggattttacctttcaggaaagacagagaatggaaggctgggtcctg 444

                                                                       
Query: 245 taagggaaaatgaccaagtgcagatgaaagtgtctgtacacatatcacagtggtcccctc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 taagggaaaatgaccaagtgcagatgaaagtgtctgtacacatatcacagtggtcccctc 504

                                                                       
Query: 305 cacatccctgcctgctcagtctccacacacgtatactaagattaattcgtcaccaatgtc 364
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 505 cacatccctgcctgctcagtctccacacacgtatattaagattaattcgtcaccaatgtc 564

                                                                       
Query: 365 atgagaaagataacatgtctctctcctgtaagaacctctattggcctcttccctgttttt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atgagaaagataacatgtctctctcctgtaagaacctctattggcctcttccctgttttt 624

                                                                       
Query: 425 gcctctactggaattttcccatgtatatctctggttttctgcaagctagttctacattcc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gcctctactggaattttcccatgtatatctctggttttctgcaagctagttctacattcc 684

                                                                       
Query: 485 tctcagaaagctggggtctctgtatcacatgggcacatctagcataaagcaagagtgggt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tctcagaaagctggggtctctgtatcacatgggcacatctagcataaagcaagagtgggt 744

                                                                       
Query: 545 tatcaatggcttcttaaatgttatttcagataaagaggggaaaaaagaggtagtaagtaa 604
           |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 745 tatcaatggctttttaaatgttatttcagataaagaggggaaaaaagagggagtaagtaa 804

                                         
Query: 605 gatcgttgtttgaagttatccaaataaatc 634
           ||||||||||||||||||||||||||||||
Sbjct: 805 gatcgttgtttgaagttatccaaataaatc 834


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1034
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1024
Effective search space:   638976
Effective search space used:   638976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no455_l04.g1 MSMg01no455_l04.g1 CHROMAT_FILE:
MSMg01no455_l04.g1 PHD_FILE: MSMg01no455_l04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:17 2005
         (623 letters)



>mm_chr1_64157150_64158172
          Length = 1023

 Score = 1197 bits (619), Expect = 0.0
 Identities = 622/623 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatggaatggtcatcgtcttgttgcttatttttggagaggcagcagatgtgcacaatcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 823 aatggaatggtcatcgtcttgttgcttatttttggagaggcagcagatgtgcacaatcta 764

                                                                       
Query: 61  caaaagaacagaaatagattctacctagctatacattttgagcttttatgttttattcac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 caaaagaacagaaatagattctacctagctatacattttgagcttttatgttttattcac 704

                                                                       
Query: 121 ctggcactgtagtggctgctcgaggggtacagctcctcctagggcatgggaggtctgtga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 ctggcactgtagtggctgctcgaggggtacagctcctcctagggcatgggaggtctgtga 644

                                                                       
Query: 181 ggaggcggtgtgggtagcagctctcctgtgaaccataggagatcctgctcagtgttggat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 ggaggcggtgtgggtagcagctctcctgtgaaccataggagatcctgctcagtgttggat 584

                                                                       
Query: 241 cgagtcactgcgttctgcactcaaaacctgtcagtccttagctgtctgtcttcccctgcg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 cgagtcactgcgttctgcactcaaaacctgtcagtccttagctgtctgtcttcccctgcg 524

                                                                       
Query: 301 actcaaggtttgtacttcctttactactgaccaagagatagtttattccatgataaagag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 actcaaggtttgtacttcctttactactgaccaagagatagtttattccatgataaagag 464

                                                                       
Query: 361 tttcatatttgtttatgagcatctccacaagcagatatattgaagttaaaagttctgagg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 tttcatatttgtttatgagcatctccacaagcagatatattgaagttaaaagttctgagg 404

                                                                       
Query: 421 ggctcatggcctcttgtgtaactgagaagcaggcaaatattacagaatttcctactcagg 480
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 403 ggctcatggcctcttgtgtaattgagaagcaggcaaatattacagaatttcctactcagg 344

                                                                       
Query: 481 ggtgagaaacttgaggtggagatgatgaagccagttatcttacagtggctgaacagtaaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 ggtgagaaacttgaggtggagatgatgaagccagttatcttacagtggctgaacagtaaa 284

                                                                       
Query: 541 caagttgcaaaagtggtgtaagagtatgcctgcgtctgcccttcttgcttctggttacta 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 caagttgcaaaagtggtgtaagagtatgcctgcgtctgcccttcttgcttctggttacta 224

                                  
Query: 601 ttcttaccatcgtacaaaacatc 623
           |||||||||||||||||||||||
Sbjct: 223 ttcttaccatcgtacaaaacatc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1023
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1013
Effective search space:   620969
Effective search space used:   620969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)