Query= MSMg01no455_l19.b1 MSMg01no455_l19.b1 CHROMAT_FILE:
MSMg01no455_l19.b1 PHD_FILE: MSMg01no455_l19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:20 2005
(517 letters)
>mm_chr1_65596792_65597708
Length = 917
Score = 965 bits (499), Expect = 0.0
Identities = 499/499 (100%)
Strand = Plus / Minus
Query: 19 atctcacggtacgaactggatggacctgtggaaaatggcctccgggctcctgtcagcatc 78
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 atctcacggtacgaactggatggacctgtggaaaatggcctccgggctcctgtcagcatc 658
Query: 79 taccagtatgtgctggacaatgaggacatatggaagatgctcaagatgcctgactatagc 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 taccagtatgtgctggacaatgaggacatatggaagatgctcaagatgcctgactatagc 598
Query: 139 atggcctacgacaaccccggtgtggcggatgtccccaccaccaccctggagcggcttcaa 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 atggcctacgacaaccccggtgtggcggatgtccccaccaccaccctggagcggcttcaa 538
Query: 199 agagcagagcctccaaactctcctggagctgaagaggcagagggcctcagccaagctgcc 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 agagcagagcctccaaactctcctggagctgaagaggcagagggcctcagccaagctgcc 478
Query: 259 cagccacccactcttaagcacccacctgggcagcagcgtgaccaagtccggggtagagca 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 cagccacccactcttaagcacccacctgggcagcagcgtgaccaagtccggggtagagca 418
Query: 319 gcagcgaaggcaaggaaggcctccttgattggaggcagaacttcccgctacagcagcaat 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 gcagcgaaggcaaggaaggcctccttgattggaggcagaacttcccgctacagcagcaat 358
Query: 379 gggaccccagtgtattatacagtcaccagcagagatcccccgctcttgaagttcaaggcc 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 gggaccccagtgtattatacagtcaccagcagagatcccccgctcttgaagttcaaggcc 298
Query: 439 cccatggaggaggtgaaggagaaagctcacaactgctgccccatctcctagtgtctagga 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 cccatggaggaggtgaaggagaaagctcacaactgctgccccatctcctagtgtctagga 238
Query: 499 actagaggagagagctgcc 517
|||||||||||||||||||
Sbjct: 237 actagaggagagagctgcc 219
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 917
Length adjustment: 10
Effective length of query: 507
Effective length of database: 907
Effective search space: 459849
Effective search space used: 459849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no455_l19.g1 MSMg01no455_l19.g1 CHROMAT_FILE:
MSMg01no455_l19.g1 PHD_FILE: MSMg01no455_l19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:20 2005
(532 letters)
>mm_chr1_65456767_65457698
Length = 932
Score = 922 bits (477), Expect = 0.0
Identities = 516/533 (96%), Gaps = 9/533 (1%)
Strand = Plus / Plus
Query: 1 atattccagttttctatgtgcctccatgcccaaaattgttttggtgtgttgtatttacca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atattccagttttctatgtgcctccatgcccaaaattgttttggtgtgttgtatttacca 260
Query: 61 tttccatgtggaaaaagttgagaaaaaaaaaaccttagtaatgtatattctaattctttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttccatgtggaaaaagttgagaaaaaaaaaaccttagtaatgtatattctaattctttt 320
Query: 121 ttggtgccatgctctgtcaggtgggtcactatcttacctttttatattcactaacattta 180
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 321 ttggtgccatgctctgtcaggtgggtcactatcttacctctttatcttcactaacattta 380
Query: 181 tcatggtgaggagatgctcttcagaatacaatccctccagcgacttacactgggcattta 240
||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct: 381 tcatggtgaggagatgctcttcagaatacaatctctccagcgacttaca-------ttta 433
Query: 241 ggcattacagctctgtacacccctaggcatcaaccaggagcactttgccctgacaggcag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 ggcattacagctctgtacacccctaggcatcaaccaggagcactttgccctgacaggcag 493
Query: 301 ttagtcactacacagtaatggaggattgaaaaatctgaatttcttcaagaagtcactttt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 ttagtcactacacagtaatggaggattgaaaaatctgaatttcttcaagaagtcactttt 553
Query: 361 ctacattttagtttatcgatggattaagagttgaactgtttgtcaaaatacttggtttct 420
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 554 ctacattttggtttatcgatggattaagagctgaactgtttgtcaaaatacttggtttct 613
Query: 421 gtagatcaagaagttataaactatacatttaggacatttgatcaaa-gcaaaacaatggt 479
||||||||||| ||||||||||||| ||||||||||||||| |||| |||||||||||||
Sbjct: 614 gtagatcaagacgttataaactataaatttaggacatttga-caaaagcaaaacaatggt 672
Query: 480 tttgaggtacaaatgttacgttattatatgaacagctattaacatttctgtag 532
|||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 673 tttgaggtacaaatgtaacgttattatatgaacagctattaacatttctgtag 725
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 932
Length adjustment: 10
Effective length of query: 522
Effective length of database: 922
Effective search space: 481284
Effective search space used: 481284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
