BAC Information

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BAC

Clone NameMSMg01-455M18
Chromosome1 (Build37)
Map Location 127,923,384 - 128,054,782
singlet/doubletdoublet
Overlap geneE030049G20Rik
Upstream geneActr3, Slc35f5, Lypd1
Downstream geneLOC383559
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-455M18.T7 (MSMg01no455_m18.b1)MSMg01-455M18.TJ (MSMg01no455_m18.g1)
ACCAG542252AG542253
length746726
length of high quality
(start - end)		532 (45 - 576)590 (57 - 646)
definitionCHROMAT_FILE: MSMg01no455_m18.b1 PHD_FILE: MSMg01no455_m18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:24 2005CHROMAT_FILE: MSMg01no455_m18.g1 PHD_FILE: MSMg01no455_m18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:24 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(127,923,384 - 127,923,912)(128,054,419 - 128,054,782)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGAGTTATTATAGTCTGGGAGCTGAAGGAGTCATTCGGAGCTGTGA
GAATATGATTTTCATCTTTTGGAATGTTTTTCGCACTCTCCTCTTCAGGT
CTCTTCAGAAAAGGACAGTCTCTTGCAGTAGCTCCTGCCTGGAAGTGAGT
AATTTCCTGAGGTGAAAGTTCAGTGAGTTCCTCTGAGGGCCCAGCAAGGG
CTGAGCTGATGGAAATTTCATCCCTGGTGACAGTGACGACTCCAGCCTGG
TGAGAGCTGAATTCCACTGGCTCTCCATTTTCTGCATCAAATATGATCGT
GACACATTCTTCCGAAGAGGTCCTCTTGACAACCCTTTGTTGCTTGATGA
AACTGAATGCCTTCGGGCTAGTCTCTAAGTGGGTGGGACATGCTTCTTCT
CCCATGTCCCGAGAGCCACCTTCAGACTTTCTGAATCCCACCTCTAGGTT
CTCCATGGACTTGTCGGTGTCCCCAGTCAAGGACAGGTCTGAAGGGCTTC
TCTCATCACTGCTCTCTATGTGTAGCTCGTTTAGGGTCTCATTGTCATCG
GTATCTGAGAGCTGCAGGTTCAGAGGCACATGGCCATGAACTTGGCTGTG
GTGGTCCCTGTCTCTTTGCACCCAGAGCAGGGGTATAATGGGGCATAGCT
TCCTCCTCCAAGGGCAGGGGGTTACACAACGAGCTAAGCCTTTCCG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXATCACTTCTGTGGCTTTAAGAGTACTATAAGGACAAAGAAATGC
TGCTTGCCTTCAGATAGACACACATATTTTATAAATGTGCTAGAGTTTGC
ATATTCAGTGTTGCCCTACGTCACATAGGCTGAAGTCATGGTACCGGGAA
AGAACTATTAAGAGGTACTAGGGCTGGGCAGACAACTGTCAGTAACGTGC
TTGCTTTCTAAGCATGAGGATCCGAGTTCAATCCCAAGAACCCCTGTGGG
AAAAGCCAGGTGTGGTGATAGGATGCAACCTTGGAATCCTTGCTGTAGGA
GAGACAGGTATATCTCTGAAAGTTTCTGGCCAGCCAACCTAAAGTACAAC
ACCCAAGATTGAACTTTGACTACCATAGACATGTATACATATTACAGACA
GACAGACAGACAGATAGACAGGCAGGCAGACAGACAGAAATAGTAGTACC
ATTAAGATGATATCCGGCCGGGCGTGGTGGTGCACGCCTTTAATCCCAGC
ACTCGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGACCAGCCTGGTC
TACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACTCTGTCTC
GAATAACCCAAAAAAAAAAAAAAAAAATGATGTCCTGGTGAAAGAAAAAT
AAAGGCCTTACCCCCTGTGAGCATAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no455_m18.b1 MSMg01no455_m18.b1 CHROMAT_FILE:
MSMg01no455_m18.b1 PHD_FILE: MSMg01no455_m18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:24 2005
         (532 letters)



>mm_chr1_127923181_127924112
          Length = 932

 Score = 1000 bits (517), Expect = 0.0
 Identities = 526/529 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctgagttattatagtctgggagctgaaggagtcattcggagctgtgagaatatg 63
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 204 ggaattctgagttattatagtctgggagctgaagaagtcattcggagctgtgagaatatg 263

                                                                       
Query: 64  attttcatcttttggaatgtttttcgcactctcctcttcaggtctcttcagaaaaggaca 123
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 264 attttcatcttttggaatgtttttcgcagtctcctcttcaggtctcttcagaaaaggaca 323

                                                                       
Query: 124 gtctcttgcagtagctcctgcctggaagtgagtaatttcctgaggtgaaagttcagtgag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gtctcttgcagtagctcctgcctggaagtgagtaatttcctgaggtgaaagttcagtgag 383

                                                                       
Query: 184 ttcctctgagggcccagcaagggctgagctgatggaaatttcatccctggtgacagtgac 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttcctctgagggcccagcaagggctgagctgatggaaatttcatccctggtgacagtgac 443

                                                                       
Query: 244 gactccagcctggtgagagctgaattccactggctctccattttctgcatcaaatatgat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 444 gactccagcctggtgagagctgaattccactggctctccattttctgcatcaaatatgac 503

                                                                       
Query: 304 cgtgacacattcttccgaagaggtcctcttgacaaccctttgttgcttgatgaaactgaa 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 cgtgacacattcttccgaagaggtcctcttgacaaccctttgttgcttgatgaaactgaa 563

                                                                       
Query: 364 tgccttcgggctagtctctaagtgggtgggacatgcttcttctcccatgtcccgagagcc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tgccttcgggctagtctctaagtgggtgggacatgcttcttctcccatgtcccgagagcc 623

                                                                       
Query: 424 accttcagactttctgaatcccacctctaggttctccatggacttgtcggtgtccccagt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 accttcagactttctgaatcccacctctaggttctccatggacttgtcggtgtccccagt 683

                                                            
Query: 484 caaggacaggtctgaagggcttctctcatcactgctctctatgtgtagc 532
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 caaggacaggtctgaagggcttctctcatcactgctctctatgtgtagc 732


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 932
Length adjustment: 10
Effective length of query: 522
Effective length of database: 922
Effective search space:   481284
Effective search space used:   481284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no455_m18.g1 MSMg01no455_m18.g1 CHROMAT_FILE:
MSMg01no455_m18.g1 PHD_FILE: MSMg01no455_m18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:24 2005
         (590 letters)



>mm_chr1_128054419_128055408
          Length = 990

 Score =  696 bits (360), Expect = 0.0
 Identities = 363/364 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atcacttctgtggctttaagagtactataaggacaaagaaatgctgcttgccttcagata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 atcacttctgtggctttaagagtactataaggacaaagaaatgctgcttgccttcagata 305

                                                                       
Query: 61  gacacacatattttataaatgtgctagagtttgcatattcagtgttgccctacgtcacat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 gacacacatattttataaatgtgctagagtttgcatattcagtgttgccctacgtcacat 245

                                                                       
Query: 121 aggctgaagtcatggtaccgggaaagaactattaagaggtactagggctgggcagacaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 aggctgaagtcatggtaccgggaaagaactattaagaggtactagggctgggcagacaac 185

                                                                       
Query: 181 tgtcagtaacgtgcttgctttctaagcatgaggatccgagttcaatcccaagaacccctg 240
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 184 tgtcagtaacgtgcttgctttctaagcattaggatccgagttcaatcccaagaacccctg 125

                                                                       
Query: 241 tgggaaaagccaggtgtggtgataggatgcaaccttggaatccttgctgtaggagagaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 tgggaaaagccaggtgtggtgataggatgcaaccttggaatccttgctgtaggagagaca 65

                                                                       
Query: 301 ggtatatctctgaaagtttctggccagccaacctaaagtacaacacccaagattgaactt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64  ggtatatctctgaaagtttctggccagccaacctaaagtacaacacccaagattgaactt 5

               
Query: 361 tgac 364
           ||||
Sbjct: 4   tgac 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 990
Length adjustment: 10
Effective length of query: 580
Effective length of database: 980
Effective search space:   568400
Effective search space used:   568400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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