Query= MSMg01no455_m24.b1 MSMg01no455_m24.b1 CHROMAT_FILE:
MSMg01no455_m24.b1 PHD_FILE: MSMg01no455_m24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:25 2005
(561 letters)
>mm_chr1_26004481_26005441
Length = 961
Score = 1054 bits (545), Expect = 0.0
Identities = 554/557 (99%)
Strand = Plus / Plus
Query: 5 gaattctctatattttggatattagacatctatctatagatatggacttgttaaaatcat 64
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 205 gaattctctatattttggatattagacatctatctatagatatggacttgctaaaatcat 264
Query: 65 tttccattcagtgggcttcctctttgtctgatagatggtgtcctttgttttacagaagtt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tttccattcagtgggcttcctctttgtctgatagatggtgtcctttgttttacagaagtt 324
Query: 125 ttctgtttcatgaggttccatttattaatcactgaccttaatgcatttggtgcccaatat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttctgtttcatgaggttccatttattaatcactgaccttaatgcatttggtgcccaatat 384
Query: 185 atacatataagtgatagatattggaatattctttctttgtttaaatttcttgatttagtg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atacatataagtgatagatattggaatattctttctttgtttaaatttcttgatttagtg 444
Query: 245 caatggtctttggtctagtctactatgtttgccatatgacagtatatcctttgtaattat 304
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 445 taatggtctttggtctagtctactatgttttccatatgacagtatatcctttgtaattat 504
Query: 305 agctagatatgttcttgattattccacatacaagtttctttcccattcttcctctgatgg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agctagatatgttcttgattattccacatacaagtttctttcccattcttcctctgatgg 564
Query: 365 atatttctatggtagataccttacatgcattccaagtttcatttcagcctcaaaaacacc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atatttctatggtagataccttacatgcattccaagtttcatttcagcctcaaaaacacc 624
Query: 425 tcacactttactttctccatttcttattatttttcaagttgtttatatactaaaacttat 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tcacactttactttctccatttcttattatttttcaagttgtttatatactaaaacttat 684
Query: 485 ttttaattaaaattggactaaaaaactataccttccaccttatttatgtgatttttgttc 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ttttaattaaaattggactaaaaaactataccttccaccttatttatgtgatttttgttc 744
Query: 545 ctctgataacttttcct 561
|||||||||||||||||
Sbjct: 745 ctctgataacttttcct 761
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 961
Length adjustment: 10
Effective length of query: 551
Effective length of database: 951
Effective search space: 524001
Effective search space used: 524001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no455_m24.g1 MSMg01no455_m24.g1 CHROMAT_FILE:
MSMg01no455_m24.g1 PHD_FILE: MSMg01no455_m24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:25 2005
(429 letters)
>mm_chr1_26076699_26077526
Length = 828
Score = 814 bits (421), Expect = 0.0
Identities = 427/429 (99%), Gaps = 1/429 (0%)
Strand = Plus / Minus
Query: 1 tatgcagaaaagtaaaacacagaagaagcaggtttttttgtgtttaagtaaatggtccag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 tatgcagaaaagtaaaacacagaagaagcaggtttttttgtgtttaagtaaatggtccag 569
Query: 61 gtatgtgtttactgacagaaacaatagctgagaatggatttacaaacgagtatggttatt 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 568 gtatgtgtttactgacagaaacaatacctgagaatggatttacaaacgagtatggttatt 509
Query: 121 attttaactatatcagcagattaaagtaaatagtatcatgactatctggaacatttaaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 attttaactatatcagcagattaaagtaaatagtatcatgactatctggaacatttaaga 449
Query: 181 atagcatggagtgaaattaagttgtagagagaaagtgtaccttattatctacactgaaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 atagcatggagtgaaattaagttgtagagagaaagtgtaccttattatctacactgaaag 389
Query: 241 aaaaaacagtgaattaaaaatgcaatataagcttactatgtcaaaccagttaatcaaaaa 300
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 388 aaaaaacagtgaattaaaaat-caatataagcttactatgtcaaaccagttaatcaaaaa 330
Query: 301 tatttccactgtaacaaaattataatcccaatcattattatttctattaaaaagatttgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 tatttccactgtaacaaaattataatcccaatcattattatttctattaaaaagatttgt 270
Query: 361 ctggttggatgacctccatatataatgtggaatttaagtctctaaattgaatttttatat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 ctggttggatgacctccatatataatgtggaatttaagtctctaaattgaatttttatat 210
Query: 421 tatatgatt 429
|||||||||
Sbjct: 209 tatatgatt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 429
Length of database: 828
Length adjustment: 9
Effective length of query: 420
Effective length of database: 819
Effective search space: 343980
Effective search space used: 343980
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
