CAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTAGTTTCTAATGAAGAAACCTGTCTCAGTGGGATTCCCTAACTT
TTCTCATAGTAAACCCTTATTGGGTTAAGACTGTCCTTTCTGTCCAAATA
AACATTTTGCAGAGTAGCACTGAACTGTTGGCTCCATCTTTTGTAATGCT
AAATTAGTTACTGAATAGGTAACTTCCTTGCTGAATTCCTACTGAATTAC
AAGTAGTCAGCTTCACGGTCTTACTAGGAAGTTGGAACTCTGGCGAAGAC
TTAACTATATCAGGATTCAATTTTGAAAGGCACTATAGTAAGATAACACT
AAAGGAGAGTATGTGGATCCTCCTTAACAGCCTTGGGTGATAGGCAGGGA
ACAGAGAGGAGGGGGTGAAGATGAGCTCCCTAGCTCAAGGCCATTTGGCT
TGTTAGGGTGGGAGACTGTGAAAGGGCTTGCCTTCTCAGGGTATGATCTC
CAACCTCTCTCCCCTCTTTGAATTAAATTAAATAAGGCCACACTTAACTG
AGGTGATCAAATGATCTTCTCATCCTTGGATGAGTGGGCATTAACCATGG
CTGGGGGAGCATTGACCCGATTCCTCCCGTGGGTGCTGTCAGGACCCACA
ATCATGGCTCTTGGTATCTTTTGGGGAAGGGGAGGGAGAGCCTTANAAAG
AATCTTTTGGGTGTAAATGGAACTAGAAACGAAACTCCCTCCA

ATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCCTGCCCCTTTTCTCAGCATGAAACTC
TTCTTGATTCCCAAGTTTTCTATTCCCCTTAAAAACACAAACCTTCTGTT
AAATAAATCTTTCTTCCACTCATTTTGCTACTCTCAAGAATGATTTTTTT
TTAGTAATAAACTTCATTAGAGAATCATCTAGATATTTTCTCTAATGAAT
GCTACTTTAACCACTCCTCAAACCACTGGAATCCGGCTTTCACCCCTGCA
TTCCTGGAAACTGGTGGTATTTCTGTAGGGCAGAGCTCTGCGAATCTGCA
CACTCAGCAAGCACCAGTGAAAGATCATTGTACTGACCCCCCGTGATGGC
GAAACCTGGGCAGCATTAAGTCATTTATGTTCAGCTGTAAATAGTATAAG
GAAATGTAGAGGATATTTCTTCCCTGGAATTTTGCAGTTCATCAGTGAGA
GAAGTCATGTGTGTTTATTTCTTTGTTTGTTTGGCAGGGGTGAGGGAAGT
CGAACCTACTGAAGTTTAACACTAGAAAAAGAAAAATAACCTAGCACTGA
CAAATATCTGGGCTTTCAACTTTTTAATTTGATCAAACAACAGAAAAAAG
TCGTGTGTGTGTGTGTGTGTGTGTGTGNGNGNGNNNNNNNNAANNNNNTT
TNNTNTGTNNNNTNNTNGTTTTTTTTTTTCTTTGGNNTTTTTG

Query= MSMg01no455_o03.g1 MSMg01no455_o03.g1 CHROMAT_FILE:
MSMg01no455_o03.g1 PHD_FILE: MSMg01no455_o03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:31 2005
         (572 letters)



>mm_chr1_97607026_97607997
          Length = 972

 Score =  969 bits (501), Expect = 0.0
 Identities = 552/569 (97%), Gaps = 4/569 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   ccccttttctcagcatgaaactcttcttgattcccaagttttc-tattccccttaaaaac 63
           |||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 771 cccc-tttctcagcatgaaactcttcttgattcccaagttttcgt-ttccccttaaaaac 714

                                                                       
Query: 64  acaaaccttctgttaaataaatctttcttccactcattttgctactctcaagaatga-tt 122
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 713 acaaaccttctgttaaataaatctttcttccactcattttgctactctcaagaaagattt 654

                                                                       
Query: 123 tttttttagtaataaacttcattagagaatcatctagatattttctctaatgaatgctac 182
           ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 653 tttttttagtaataaactttattagagaatcatctagatattttctgtaatgaatgctac 594

                                                                       
Query: 183 tttaaccactcctcaaaccactggaatccggctttcacccctgcattcctggaaactggt 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 tttaaccactcctcaaaccactggaatccggctttcacccctgcattcctggaaactggt 534

                                                                       
Query: 243 ggtatttctgtagggcagagctctgcgaatctgcacactcagcaagcaccagtgaaagat 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 ggtatttctgtagggcagagctctgcgaatctgcacactcagcaagcaccagtgaaagat 474

                                                                       
Query: 303 cattgtactgaccccccgtgatggcgaaacctgggcagcattaagtcatttatgttcagc 362
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 cattgtactgaccacccgtgatggcgaaacctgggcagcattaagtcatttatgttcagc 414

                                                                       
Query: 363 tgtaaatagtataaggaaatgtagaggatatttcttccctggaattttgcagttcatcag 422
           |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 tgtaaatattataagaaaatgtagaggatatttcttccctggaattttgcagttcatcag 354

                                                                       
Query: 423 tgagagaagtcatgtgtgtttatttctttgtttgtttggcaggggtgagggaagtcgaac 482
           ||| |||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||
Sbjct: 353 tgatagaagtcatgtgtgtttatttctttgtttgttcggcaggggagagggcagtcgaac 294

                                                                       
Query: 483 ctactgaagtttaacactagaaaaagaaaaataacctagcactgacaaatatctgggctt 542
           |||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||||
Sbjct: 293 ctactgaagtttaacactagaaaaggaaaaataacctagcactgtcagatatctgggctt 234

                                        
Query: 543 tcaactttttaatttgatcaaacaacaga 571
           |||||||||||||||||||||||||||||
Sbjct: 233 tcaactttttaatttgatcaaacaacaga 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 972
Length adjustment: 10
Effective length of query: 562
Effective length of database: 962
Effective search space:   540644
Effective search space used:   540644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)