Query= MSMg01no455_p11.b1 MSMg01no455_p11.b1 CHROMAT_FILE:
MSMg01no455_p11.b1 PHD_FILE: MSMg01no455_p11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:37 2005
(314 letters)
>mm_chr1_54878712_54879425
Length = 714
Score = 600 bits (310), Expect = e-176
Identities = 313/314 (99%)
Strand = Plus / Plus
Query: 1 gctcatgagtggaattaaaaatgcattctattttctaaagaactagtaatctgccctaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gctcatgagtggaattaaaaatgcattctattttctaaagaactagtaatctgccctaac 260
Query: 61 agatacccagataaattacaagctcactactctcatttgtcttgttctttaaaaagccca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agatacccagataaattacaagctcactactctcatttgtcttgttctttaaaaagccca 320
Query: 121 ttcttgtaaaatatcagtttctttttctctcatttgcatcttgagattaacattcctcca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcttgtaaaatatcagtttctttttctctcatttgcatcttgagattaacattcctcca 380
Query: 181 ccacctacattattttctgtagtcaaagtggtagcatgaatcatttcttcccctttgctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccacctacattattttctgtagtcaaagtggtagcatgaatcatttcttcccctttgctt 440
Query: 241 gctataagttctttgcttttaacttaagatgcattctattacagtcacatatgagcccct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gctataagttctttgcttttaacttaagatgcattctattacagtcacatatgagcccct 500
Query: 301 cctatcacagaaca 314
||| ||||||||||
Sbjct: 501 cctttcacagaaca 514
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space: 215025
Effective search space used: 215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no455_p11.g1 MSMg01no455_p11.g1 CHROMAT_FILE:
MSMg01no455_p11.g1 PHD_FILE: MSMg01no455_p11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:37 2005
(537 letters)
>mm_chr1_54975807_54976744
Length = 938
Score = 988 bits (511), Expect = 0.0
Identities = 531/538 (98%), Gaps = 1/538 (0%)
Strand = Plus / Minus
Query: 1 tctttcagntgcctcccccactttgaactagaaaatcactggctctggctctattaccta 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 tctttcagttgcctcccccactttgaactagaaaatcactggctctggctctattaccta 679
Query: 61 gcaagccttgagcatccttctgtaactccccaggcatctttaatactgggacaccatttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 gcaagccttgagcatccttctgtaactccccaggcatctttaatactgggacaccatttt 619
Query: 121 gctccaaggaagtttccagagctcttcataaaaataattagatctgcagagacactggtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 gctccaaggaagtttccagagctcttcataaaaataattagatctgcagagacactggtg 559
Query: 181 ttgccctgacatggaaccttagtaagagttctaacttgtctctgaaagtttccggattat 240
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ttgccctgacatggaaccctagtaagagttctaacttgtctctgaaagtttccggattaa 499
Query: 241 tttgctttagtttttctttgattgatttaaaaagatagcatcagattggaaataaattct 300
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 498 attgctttagtttttctttgattgatttaaaaagataacatcagattggaaataaattct 439
Query: 301 tggattccacttactatgggtctctagtagttactggcttcaaacagtccctggcattgg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tggattccacttactatgggtctctagtagttactggcttcaaacagtccctggcattgg 379
Query: 361 cttttcttgtctatacagtttctggctttcccttgtaaggaagctgctttaacgg-tttt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 378 cttttcttgtctatacagtttctggctttcccttgtaaggaagctgctttaacggttttt 319
Query: 420 ttcaagcctgataaacatacttttgagacctactgaagggacatgggtgctttccctaag 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ttcaagcctgataaacatacttttgagacctactgaagggacatgggtgctttccctaag 259
Query: 480 aaggtcttctgggatctccaggagcctgatgtagagacacagacccctgcagctactc 537
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 258 aaggtcttctgggatctccaggagcctgatgtagagacacagacccctgcggctactc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 938
Length adjustment: 10
Effective length of query: 527
Effective length of database: 928
Effective search space: 489056
Effective search space used: 489056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
