BAC Information

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BAC

Clone NameMSMg01-456A06
Chromosome1 (Build37)
Map Location 175,239,931 - 175,382,106
singlet/doubletdoublet
Overlap geneDarc, Cadm3
Upstream geneIgsf8, Kcnj9, Kcnj10, Pigm, LOC665819, Slamf9, LOC100040274, Igsf9, Tagln2, Ccdc19, EG240916, Slamf8, Fcrl6, Dusp23, LOC100040320, Crp, LOC665875, Apcs, Olfr16, GA_x5J8B7W5Q1F-395172-396104, Olfr1408, GA_x5J8B7W5Q1F-344462-343889, Olfr1406, Olfr218, Olfr1405-ps1, Olfr1404, Fcer1a, Olfr1403
Downstream geneAim2, EG240921, BC094916, LOC623121, AI447904, E430029J22Rik, LOC665972, AI607873, Ifi204, EG666028, LOC100040462, Mnda, Ifi203, Ifi202b, Ifi205, Olfr433, Olfr432, GA_x5J8B7W3B3M-30314-31216, Olfr430, Olfr429, Olfr426, Olfr1528-ps1, Olfr244, Olfr424, Olfr423-ps1, Olfr421, Olfr422-ps1, Olfr420, Spna1, Olfr419, 1810030J14Rik, Olfr417, GA_x5J8B7W3B3M-312879-313274, GA_x5J8B7W3B3M-318013-318414, Olfr415, Olfr414, Olfr220
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-456A06.T7 (MSMg01no456_a06.b1)MSMg01-456A06.TJ (MSMg01no456_a06.g1)
ACCAG542418AG542419
length736744
length of high quality
(start - end)		525 (46 - 570)471 (78 - 548)
definitionCHROMAT_FILE: MSMg01no456_a06.b1 PHD_FILE: MSMg01no456_a06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:41 2005CHROMAT_FILE: MSMg01no456_a06.g1 PHD_FILE: MSMg01no456_a06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:41 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(175,239,931 - 175,240,452)(175,381,636 - 175,382,106)
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCTGATTGCCTCATCTAGATTCTTTACTCCTACTCCTGACAGAAT
GGGTCCCATTACTGTGCTGAGCACATTGCACATGGTGCTTTTCCAGATAT
GTCTTTGCCTAGAAACAATGATTAGTTCAGAAATGAACCTGGAGCCCAAC
ATGGACAGAGTTTTCCAGGGATTGCATAGTTCCTGAGGTTTGTCTACTGT
AAAATTGTCGATGCTGAAGACCATGGAGGCCTGGAGATGCCAGAGGCTGC
TTTTGCCATTGACTGGAAAGTGCTTGAGGAGAGAAGAACATCAGCTGGAA
TATAAGAGCAAAGAGATTAAAGACACCTTATGATGATGCTGGAGTCACAG
TAGCGACCACACCTACTATGAAACCCTGGGCTCCATGAACAAGGACATTC
ATTTAGTTTCATCATTTTTCCTGTTACCTAGTCCAGGTTGCATTTGTGGC
ATTCACAATGAAAGTACTGCAAACAATATACAGCCTTCTTGCCTGTCTTT
GGATTTTGTTCTTTTTGTTTTTCAGGNCACTGTTCTGGCACAACTTCTCC
ACCCAAGTCCCCACGACAGCAGATAAAAGACTGAATAGAGATGACAGTAT
TTTACTGTTACAAGACACCCACCCCCAAAAACTTAACTGAATCCCCTGGC
ATTTGTCCCTGGGAACTGNGTCCCGGTGCGAACATG

NNCCCATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTATAACCCCTTCCCCCAGGCTAG
ACTGAGCAACTGGAATTGTGTAAGTCAGTCTGCATGCTCACTTCCTCTAT
CTCTTCTCCTTGGATCTGGGTCAGACAGAAGGATGAGCAGAAAGGTCTCC
ACCCACAGGCAACATGGCCCAAATCTAGCCCAGAATTCTGCTCACTGCAG
TGGGAAGTAGCAAGAAACAGAAAGTAACGCCTTTTAGACCCAGGCCACAT
CTCATAGATGAAACCTCCCTCCCGACTTACACTAGAACTAAGCAATTGCC
TACATGCCAGTGGGACTGTCTCAAGCTTGCTTAGATCGTTACCAGCCTGG
CAGTGAGAAAGGGACACACACCCTACTCTGACCACATATTTTCTCTGCCT
GTGAGTCCCAGGTGTGACACAGGTTAGTGTCGCCCTTGGTGGACCCTAGA
TTTGGGTATCAGCTCTCTTCAGGTTAGTGTTATCAGACAGATCATCAAGC
ACAAATTATCAAGATCATTTGACATGACTTACCACCAAGCAGGGACTTAT
ACCCTATTGGGATGTCATATTTGGGTCCGGTTGTCTACTGGGATGGCATA
CACCTTGGGGCTTTTCTCCTGAAATTTATATTAAATTTCCATAGGATAAC
GAGATTTTCTAGCTTATTCATTGGGTCCTCGTTTATTTTTGACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no456_a06.b1 MSMg01no456_a06.b1 CHROMAT_FILE:
MSMg01no456_a06.b1 PHD_FILE: MSMg01no456_a06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:41 2005
         (525 letters)



>mm_chr1_175239728_175240652
          Length = 925

 Score = 1002 bits (518), Expect = 0.0
 Identities = 521/522 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctctgattgcctcatctagattctttactcctactcctgacagaatgggtccca 63
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctctgattgactcatctagattctttactcctactcctgacagaatgggtccca 263

                                                                       
Query: 64  ttactgtgctgagcacattgcacatggtgcttttccagatatgtctttgcctagaaacaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttactgtgctgagcacattgcacatggtgcttttccagatatgtctttgcctagaaacaa 323

                                                                       
Query: 124 tgattagttcagaaatgaacctggagcccaacatggacagagttttccagggattgcata 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgattagttcagaaatgaacctggagcccaacatggacagagttttccagggattgcata 383

                                                                       
Query: 184 gttcctgaggtttgtctactgtaaaattgtcgatgctgaagaccatggaggcctggagat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gttcctgaggtttgtctactgtaaaattgtcgatgctgaagaccatggaggcctggagat 443

                                                                       
Query: 244 gccagaggctgcttttgccattgactggaaagtgcttgaggagagaagaacatcagctgg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gccagaggctgcttttgccattgactggaaagtgcttgaggagagaagaacatcagctgg 503

                                                                       
Query: 304 aatataagagcaaagagattaaagacaccttatgatgatgctggagtcacagtagcgacc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aatataagagcaaagagattaaagacaccttatgatgatgctggagtcacagtagcgacc 563

                                                                       
Query: 364 acacctactatgaaaccctgggctccatgaacaaggacattcatttagtttcatcatttt 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 acacctactatgaaaccctgggctccatgaacaaggacattcatttagtttcatcatttt 623

                                                                       
Query: 424 tcctgttacctagtccaggttgcatttgtggcattcacaatgaaagtactgcaaacaata 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tcctgttacctagtccaggttgcatttgtggcattcacaatgaaagtactgcaaacaata 683

                                                     
Query: 484 tacagccttcttgcctgtctttggattttgttctttttgttt 525
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tacagccttcttgcctgtctttggattttgttctttttgttt 725


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 925
Length adjustment: 10
Effective length of query: 515
Effective length of database: 915
Effective search space:   471225
Effective search space used:   471225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no456_a06.g1 MSMg01no456_a06.g1 CHROMAT_FILE:
MSMg01no456_a06.g1 PHD_FILE: MSMg01no456_a06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:41 2005
         (471 letters)



>mm_chr1_175381436_175382306
          Length = 871

 Score =  903 bits (467), Expect = 0.0
 Identities = 470/471 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tataaccccttcccccaggctagactgagcaactggaattgtgtaagtcagtctgcatgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 tataaccccttcccccaggctagactgagcaactggaattgtgtaagtcagtctgcatgc 612

                                                                       
Query: 61  tcacttcctctatctcttctccttggatctgggtcagacagaaggatgagcagaaaggtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 tcacttcctctatctcttctccttggatctgggtcagacagaaggatgagcagaaaggtc 552

                                                                       
Query: 121 tccacccacaggcaacatggcccaaatctagcccagaattctgctcactgcagtgggaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 tccacccacaggcaacatggcccaaatctagcccagaattctgctcactgcagtgggaag 492

                                                                       
Query: 181 tagcaagaaacagaaagtaacgccttttagacccaggccacatctcatagatgaaacctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 tagcaagaaacagaaagtaacgccttttagacccaggccacatctcatagatgaaacctc 432

                                                                       
Query: 241 cctcccgacttacactagaactaagcaattgcctacatgccagtgggactgtctcaagct 300
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 cctcccgacatacactagaactaagcaattgcctacatgccagtgggactgtctcaagct 372

                                                                       
Query: 301 tgcttagatcgttaccagcctggcagtgagaaagggacacacaccctactctgaccacat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 tgcttagatcgttaccagcctggcagtgagaaagggacacacaccctactctgaccacat 312

                                                                       
Query: 361 attttctctgcctgtgagtcccaggtgtgacacaggttagtgtcgcccttggtggaccct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 attttctctgcctgtgagtcccaggtgtgacacaggttagtgtcgcccttggtggaccct 252

                                                              
Query: 421 agatttgggtatcagctctcttcaggttagtgttatcagacagatcatcaa 471
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 agatttgggtatcagctctcttcaggttagtgttatcagacagatcatcaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 871
Length adjustment: 10
Effective length of query: 461
Effective length of database: 861
Effective search space:   396921
Effective search space used:   396921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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