BAC Information

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BAC

Clone NameMSMg01-456D13
Chromosome1 (Build37)
Map Location 100,404,142 - 100,404,472
singlet/doubletsinglet
Overlap geneSlco6d1
Upstream geneD1Ertd622e, Hisppd1, Zh2c2, Pam, LOC100041823, LOC666153, LOC100040887, LOC100041868
Downstream geneEG666182
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-456D13.T7 (MSMg01no456_d13.b1)MSMg01-456D13.TJ (MSMg01no456_d13.g1)
ACCAG542575AG542576
length7331,347
length of high quality
(start - end)
331 (320 - 650)---
definitionCHROMAT_FILE: MSMg01no456_d13.b1 PHD_FILE: MSMg01no456_d13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:58 2005CHROMAT_FILE: MSMg01no456_d13.g1 PHD_FILE: MSMg01no456_d13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXAATTCATAGAGGAGCCGCGGA
ATTCATGGATTACTACAATTTTGGAAGCTCTCTGATAAGTATGAAATATG
GTAAGCATTTCAAAATACATCATTTGACATAAGATTACAATATCATTTTA
TAAATGGGAAATTAACATCTTTAGAAATAAATTATGTTTTATTTGGGTAA
ATGGCATTTTTCATTAAAAAAAACCTTTTGTTTAATGTGATATTGTTACC
CCCTTCTTTTGTTTCAGGGATTAACATGCAAATATTGTCAGGCTTGAGTT
GTCTTTACGGTTTTTACTTACATGATTATGTGGTAAAAGGAGATGGTAAA
AAAGCAGAAGAAAAGTAAGAACATTAATTTCAAACTGATTTCTTCATTGG
GTAAGGATTGTTTGCTTTTCCTTTGTCAATGGAATATCATATTGATAATT
TTAAAACAATAATTGTGAATAGTTACATTTAAAAATATGTTTCTTTTTAT
CACACAATATTTATGTGAAACCACTGTTTGTATTAAGATAATTGTTAAGA
TAATTGGAGTATAACTAATTGTTTTTCAATAATGCTATAAATTAGAAATT
TCCCCATAGAATATATAATGAAGTTTAACTTAAATTTGAATTAAATTTCA
AAGTATATTATTGCAGCTTTTTGGAGTCAAAATTATATTCATTGGTGATT
TGATATAGATTCTTTAGAAAAAATGCACTACCN
AAAACAAGCAAATTGATGGAACTTTGCCCGGGGATGATGGGCGGAGTATA
TTCCACCCAAAAAAGAGAGCGAGGACGGATTTAAGAGATACTATACCACA
AGAAATAGATGGAAGAAAAGCATAAACAATATAATCGAACAACATATGAT
TAGAGCAATCAGTATTGTGCCGCATCAGTGCGTTCCGCTTTCGACTCAAG
ACCCCATGATCAACAGGTGCATCATGGCTCCCCGTATACCCACCATTACT
CCGTGATTGATATTCGTTTCACACCTCCCACCTCGCCATTTAGGCATTTA
GCCATAGTTACATATGACGGTCTATCGCGCGTATATACACAGAGAAAATG
TGAGACGCGTGCAGTAAATAAGTTGACGATGAAGTTATATGATCAAGGAG
ATAATACATAACAGAAGATAGCGGCAAACAATCACGATGGCTGGGTATGA
TCTACGCATGCACCGTTTGCGGCCTCTTCAACCCTCGTCCTTCCTTTCCC
TTCCGCGTTTCACGTCGATAAGGTATGATATCAACATTATGACAAAGATA
AGTGAAACATATTACGCATAATGTCAACGTTGGTGAGTTATTGTAGAGCG
CGTTTTATACAGTATACTAAATTATGACAATAAAAACAAAAAGAAAACAA
ACAGATTGAGAACACTATATCAAGATAGTATCGATCGACGACCAACATCG
AGTTTGCGCCGTGTGTGCGTGATTCTCGGCTGTCTTCACATAAATGCAGT
TAACACATATATTATAGAGCGGCCGTACCGGCGATATATTAATGAATATT
GCGTATCAGGATACCACGAAGATGATGCTCAACTCGGCGTGTGATNGTAT
GAACAGCCAGCCAGACAGAAGACATATCCAATGTATACGTATGTGCCAGC
ANCAAGTCCGTAGAATCTATTATGACACACAGCACACTAGCTAAGAAATG
TATATCACATTTATAATATACCTACCTACCACAATAGATATATAGCACAC
AGAGCGAGAGGTGAACGTGTAATACCACCAGCACACTATGATATATTCGA
TCGACGACTGTCATCTACACCACCACGCCCTCATCCACACACCACATATC
AGCTATGTATCTCGATCACAATTCGAAAAATAGAGTACCACACCGCTATA
CTAACACGGCTATATAGTCTATATATAAATGCACCGCATGAAAGCAGACA
TAGATATATATGATAACAATCGCACCACTAGGACACAGCTAGGAGGTGGC
TGGACCTAGGTCGCGTGATTAGTTTGTNCTCTGCGACGCGAGCGATGTAG
TATATTAACATCAACNATGTCGCACACGTATGTAATTCTGAACTGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no456_d13.b1 MSMg01no456_d13.b1 CHROMAT_FILE:
MSMg01no456_d13.b1 PHD_FILE: MSMg01no456_d13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:58 2005
         (331 letters)



>mm_chr1_100403942_100404672
          Length = 731

 Score =  625 bits (323), Expect = 0.0
 Identities = 329/331 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acatgattatgtggtaaaaggagatggtaaaaaagcagaagaaaagtaagaacattaatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acatgattatgtggtaaaaggagatggtaaaaaagcagaagaaaagtaagaacattaatt 260

                                                                       
Query: 61  tcaaactgatttcttcattgggtaaggattgtttgcttttcctttgtcaatggaatatca 120
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcaaactgatttcttcattgagtaaggattgtttgcttttcctttgtcaatggaatatca 320

                                                                       
Query: 121 tattgataattttaaaacaataattgtgaatagttacatttaaaaatatgtttcttttta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tattgataattttaaaacaataattgtgaatagttacatttaaaaatatgtttcttttta 380

                                                                       
Query: 181 tcacacaatatttatgtgaaaccactgtttgtattaagataattgttaagataattggag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcacacaatatttatgtgaaaccactgtttgtattaagataattgttaagataattggag 440

                                                                       
Query: 241 tataactaattgtttttcaataatgctataaattagaaatttccccatagaatatataat 300
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatagctaattgtttttcaataatgctataaattagaaatttccccatagaatatataat 500

                                          
Query: 301 gaagtttaacttaaatttgaattaaatttca 331
           |||||||||||||||||||||||||||||||
Sbjct: 501 gaagtttaacttaaatttgaattaaatttca 531


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 731
Length adjustment: 9
Effective length of query: 322
Effective length of database: 722
Effective search space:   232484
Effective search space used:   232484
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)