BAC Information

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BAC

Clone NameMSMg01-456E21
Chromosome1 (Build37)
Map Location 173,456,428 - 173,456,784
singlet/doubletsinglet
Overlap geneItlna
Upstream geneNos1ap, LOC100040002, LOC640532, Olfml2b, Atf6, Dusp12, Fcrlb, Fcrla, LOC100040778, Fcgr2b, Fcgr4, Fcgr3, 1700009P17Rik, Sdhc, Mpz, Pcp4l1, Nr1i3, Tomm40l, Apoa2, Fcer1g, Ndufs2, Adamts4, B4galt3, Ppox, Usp21, Ufc1, EG622236, Dedd, Nit1, Pfdn2, 1190002J23Rik, Pvrl4, Arhgap30, Usf1, EG226654, F11r, Refbp2
Downstream geneCd244, Ly9, Slamf7, Cd48, LOC100041098, Slamf1, Cd84, Slamf6, Vangl2, LOC100040199, Nhlh1, Ncstn, Copa, Pex19, LOC100041219, Wdr42a, Pea15a, Casq1, Timm23p, Atp1a2, Igsf8, Kcnj9, Kcnj10, Pigm, LOC665819, Slamf9, LOC100040274, Igsf9, Tagln2, Ccdc19
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-456E21.T7 (MSMg01no456_e21.b1)MSMg01-456E21.TJ (MSMg01no456_e21.g1)
ACCAG542639AG542640
length782763
length of high quality
(start - end)		361 (47 - 407)243 (81 - 323)
definitionCHROMAT_FILE: MSMg01no456_e21.b1 PHD_FILE: MSMg01no456_e21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:05 2005CHROMAT_FILE: MSMg01no456_e21.g1 PHD_FILE: MSMg01no456_e21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTATGTCCCAAGATCAGGTGCAGTCTGGACATGAGCATTGTACTA
ACCAGTGTGGTATAAAGAATGGTCTCCAACAATCTCTGATTGGTAAATAA
AAAGCTAGAACTGCTGACTGGGCAGGAGAGAGAAAAATTGGAACTTCGAA
TTGAGTGAAGGGATCTTAGGTAAGGCCCATAAGAGGAAAGACAATGGAGA
GGGAAAGAAGGAGGTCATTGTGAGGCAGGATGCATCATAAGCACACTGCT
AAGAGAAGTTAGCCCTGAGGACATGCAGGAAACAGAGCAAGACTCAGTTG
GCAAGTACTGGGCCATTTATCTGGTTATTGATAGACTAGTTGGGTTAGAA
TAGCTCAGAAAATGCCCAGTATGGTACCAACAGCTTGTTAATAAAATCTA
ATGTCTCTATGTCTTTTACTTGGCAGCTAATCAGGATAGAGTATGACAGA
AACACCCCGTAAATTTACTATTTTACTAAGAAATGTATTGAAACGTTTTC
CCCATAATGGAAATGCATTGTTTTAGTTTACCGGTCTGCCATTTAGGGAA
AAACAATCGGCTTGACCTTTTTTGGGCTCCCAATCCTTTTTATTGTAAAC
TTTTTCAACCCTATACCTTCGGGGTCCTCTCTCATAGACATCTCTCTTGT
TCCATATCCACTTCTCTTTCGGTTTTTCTCCTTCCCCCTTGGTTGTTGTA
TTTCCCGGGTGTTTCTTATGTCATTCCCCTTN

AATAACCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTAAAATTATTTCAGTGATT
ATTAAGCTTATTTATAGTGGGGCTACTATTAGATCTTTTTCTGATAGTCA
AAACTGTGATAAGAACTCTGCCAGTCTTTCAAGTGTCACCAGTTAATTGC
TCTTAGATAGTAGCCAGACTTCCTTCTATTTAGAGCACATTCCAAGAGGT
TGTAAAACAATTAACCAAAGGTCATAAAGGGGGGACTAATGATTTATTAT
AGGTGCTAGGACAGAAGATAATATATTATCTGGGTTTATCTATACAAAAC
TTCACTTTATAACTTAGTTATGGTTTTAAACCTTCAGTGAACCTGTGGAA
CTGAGACAGGTGATCGATGTTTAGCTAGATAATCACTCCTAATGGATATG
CATGTAAACATTCTCTGTTGTAAACTTCTATTTCAATTTATGATTTGATT
TTGTGTGTGAACTTTTTAACATGTGATCCTGTATTCTGAAAGAGGTTTAA
GGACTGAGGACAAAGAACTGAGGGACTGAGGTGAAAGTAATGGAGTTTTT
ATTAACTCTTCTCTATAACTTCTTCTCCTTTCATTTATCTCTTTATCTTT
TTTTTTTTTTTTTTTTCGTAGTACCCGATGCATCTTTCTCTTTTATATTT
TCTTTTTACTTACTTATCTCTTTGCCTCGCGTTTTTTATCCATATTTTAC
TTTTTTTTTTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no456_e21.b1 MSMg01no456_e21.b1 CHROMAT_FILE:
MSMg01no456_e21.b1 PHD_FILE: MSMg01no456_e21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:28:05 2005
         (361 letters)



>mm_chr1_173456224_173456984
          Length = 761

 Score =  683 bits (353), Expect = 0.0
 Identities = 356/357 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctatgtcccaagatcaggtgcagtctggacatgagcattgtactaaccagtgtgg 64
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctatgccccaagatcaggtgcagtctggacatgagcattgtactaaccagtgtgg 264

                                                                       
Query: 65  tataaagaatggtctccaacaatctctgattggtaaataaaaagctagaactgctgactg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tataaagaatggtctccaacaatctctgattggtaaataaaaagctagaactgctgactg 324

                                                                       
Query: 125 ggcaggagagagaaaaattggaacttcgaattgagtgaagggatcttaggtaaggcccat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggcaggagagagaaaaattggaacttcgaattgagtgaagggatcttaggtaaggcccat 384

                                                                       
Query: 185 aagaggaaagacaatggagagggaaagaaggaggtcattgtgaggcaggatgcatcataa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aagaggaaagacaatggagagggaaagaaggaggtcattgtgaggcaggatgcatcataa 444

                                                                       
Query: 245 gcacactgctaagagaagttagccctgaggacatgcaggaaacagagcaagactcagttg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gcacactgctaagagaagttagccctgaggacatgcaggaaacagagcaagactcagttg 504

                                                                    
Query: 305 gcaagtactgggccatttatctggttattgatagactagttgggttagaatagctca 361
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gcaagtactgggccatttatctggttattgatagactagttgggttagaatagctca 561


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 361
Length of database: 761
Length adjustment: 9
Effective length of query: 352
Effective length of database: 752
Effective search space:   264704
Effective search space used:   264704
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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