BAC Information

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BAC

Clone NameMSMg01-456G06
Chromosome1 (Build37)
Map Location 76,875,361 - 76,875,872
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100039137, Tfdp1-ps, Epha4, LOC100039330
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-456G06.T7 (MSMg01no456_g06.b1)MSMg01-456G06.TJ (MSMg01no456_g06.g1)
ACCAG542704AG542705
length7341,784
length of high quality
(start - end)
520 (48 - 567)---
definitionCHROMAT_FILE: MSMg01no456_g06.b1 PHD_FILE: MSMg01no456_g06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:11 2005CHROMAT_FILE: MSMg01no456_g06.g1 PHD_FILE: MSMg01no456_g06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCATCATATCCATGTATTAAATTGTCAACAAATTAACAATGAAAA
ACTTCTAAGTAGTTCTTATAATTAATATCTTAGTGATTGCATGGTGTTCA
CATACATACGCATAAGTATGTGCCATTATCTTCTAAGCCAAATCATTTTA
TATGTATATGAATAACGATAAGGAGCTACCACAAGAAAAAAAAACTATTT
AAATTTTTCTCAGTATTTAATTATAAGCATCTCCCATTCAATCAAGAACT
CAGTAAGTATATTTTAATGGTTGCATGGTCTTCTGCTGAATGGCATTCGT
ATATATAATTGAACTGAACATTTTTCTCTTCAGGGATACTGACAGTGTTT
CCATAGATTTGAGTAGCATGTATTTGAAAACGATGGGAGGAAACATTTGT
TTACGTTTTCAACTGGTTTGTTTTCCCATGGCCCGATCGCTCATGCAGAC
TCTGTGAATCGGGAAGCATTTTTATGGCTCTCAATGCACAGGACTCCTGC
CATTTCCAAGCATGATGGGTTGTTTTTACCTGGCTCCAGAATGTTCTCAC
TCCCTGTAAGCAATATTTATTTATGTAAATTGTTTACTAAAGGTAATGAA
AGAATTGGAGGAGAACTTAAAGGCGGAAGCAGTTTGGTCTGAAACTTCTT
GAAAAACCTTTTTGGCCTTGATCCCATTGTACCG
TTTCAACCTTTTTTNCCCCNCCCNCTGGATTNTGCTTTGGTTAAGAGGGG
CAGGAGACGTCTACCCACGACAAAGGACCGCNTGGTGGCATAGAGAGTGG
AAGGCAGGTGTCACAGTCGCTAGTGATGCGCGGCCGGATGTGTCGGTGCC
GTCGTAGGCGGCCGTAGGCGGTTGCGTGGCAAGCGTGTGTGCACATGTGC
GTGTGCATTGAGTCGTGACACGCGCCGCGGTGCGCGGCGTTGCGAGCTAT
TATACAAACGANGACGGATATATTTAATATACATACATCATAATAATGAT
ATACATTTAACTTGTTTATATACACGTCGTGTAAAATGCGACACTATATC
TATGACACCACTGTGAGACAGCACGAATCGCTGGTGTTATCTGCGCGTGC
GAGNGTGGCTGGCCCCCGCTCCTCCCTCTCGTTCCGTGTCCATCCACACG
CACGCATGTATACTCGGCTACAGCGACACAAGAGTTCATAGTGAGAGCAG
GTGGCCGCAGATATAGCGAGAGTACACGCGACAAGATAGACGAGAAGGAT
GATTGTGAGNTGATCTGCATTTGTACCCTACCACGTATCAATAGCATACT
GACACAATATATACGAGCGCAGCACAGCACGATAATTTACGACACCGATA
TAGTATTATCTATACATCACACGAGTGTATGTGAATGCACAGATCACCAC
ATCATNATATCATTAGACAGATTGTGCACGAGAGTCACCGCGTATGAGAT
ACGCATGCGCGAGTCGCGGCGTGGCGTGCGAGTACCGCGATATAGATTAT
GTGCGCGTCGTTGAGCGAGATGAAGTGGCGATCGCAGTTGTATGCGATTG
TTCGTGCGTGAGAATATTTCNCAACGCGATCATTATCGCAATAACCACGA
ACCGCGATTATGGCGACTGCGACAGATAATATAACACGACTACGCGCGTG
ACTGATTGACGCAGTGCACNCTGTCATCTGTTCGAACTTCGTCGCGCACG
ATATATCATTCATTGCACGCGATAGCGGGAGCGGCGACGCGCGGATGTCC
NGNTGTGCGTTTCTCATATTGTAGCACGTCGACAGCGTGGCGNTGACGTG
TATACAGACGCNCCCCNACTCTCTATATCTATAACTGCGAGCTTACTGTA
CGTTTGAGATATAGCATAGATGCCGTATCGATACGGACAGATACGTCTCG
TGTGTAGTGATTCACGTATNTCAGTGTGTGATATGCAGCGCCCCGACGCT
GATTCACACANTGACCGCCCGACGACCNTCTCNGAGAGATCTGACGTATT
ACGTCGCGTCGTATCGTATGCGATTTTACTGCCGCGCGTCTCGCGCATAT
TGATGTCGACAGTGNTGTTCCTGTGTAGCGCATCGACACGACGTGGCACC
ATCGTTNGTNTACGCACCGGCGTCTCTCACGTGTAGCNTGGCGTGCTACG
NCGTATNGCACTGTAGTCGAAGACAAGCATCAANCGATTGTATGCGANTG
AGTAGGNCGCGTCGTGTCGACGACAAGTGACGTGATATGCACNTGCATGC
TCGTCATACTGTACTTTGAGTCTCAGGCTACTATCGACTTATTANTACAG
ACGTGCNTGATATCACTACTATATGCCCGCGCTACTCCTTACACANTATA
GTGACTGCACACATCTACATGCGCACATGCGNCTCGAGTTTAACGCCATC
GTTTGTCGTNCCCAGGATCATCCGACATGAGCACATGGANNGTATTATAT
GTGAACGCATCGACACGTCGGTACGGCATGCGNN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no456_g06.b1 MSMg01no456_g06.b1 CHROMAT_FILE:
MSMg01no456_g06.b1 PHD_FILE: MSMg01no456_g06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:28:11 2005
         (520 letters)



>mm_chr1_76875156_76876079
          Length = 924

 Score =  909 bits (470), Expect = 0.0
 Identities = 501/512 (97%), Gaps = 4/512 (0%)
 Strand = Plus / Plus

                                                                       
Query: 6   aattcatcatatccatgtattaaattgtcaacaaattaacaatgaaaaacttctaagtag 65
           |||||||||||  |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 206 aattcatcataaacatgtattaaattgtcaataaattaacaatgaaaaacttctaagtag 265

                                                                       
Query: 66  ttcttataattaatatcttagtgattgcatggtgttcacatacatacgcataagtatgtg 125
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ttcttatcattaatatcttagtgattgcatggtgttcacatacatacgcataagtatgtg 325

                                                                       
Query: 126 ccattatcttctaagccaaatcattttatatgtatatgaataacgataaggagctaccac 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ccattatcttctaagccaaatcattttatatgtatatgaataacgataaggagctaccac 385

                                                                       
Query: 186 aagaaaaaaaaactatttaaatttttctcagtatttaattataagcatctcccattcaat 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 aagaaaaaaaaactatttaaatttttctcagtatttaattataagcatctcccattcaat 445

                                                                       
Query: 246 caagaactcagtaagtatattttaatggttgcatggtcttctgctgaatggcattcgtat 305
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 446 caagaactcagtaagtatattttaatggttgcatggtcttctgctgaatggcattcatat 505

                                                                       
Query: 306 atataattgaactgaacatttttctcttcagggatactgacagtgtttccatagatttga 365
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 atataattgaattgaacatttttctcttcagggatactgacagtgtttccatagatttga 565

                                                                       
Query: 366 gtagcatgtatttga-a-aacgatgggaggaaacat--ttgtttacgttttcaactggtt 421
           ||||||||||||||| | ||||||||||||||||||  ||||||||||||||||||||||
Sbjct: 566 gtagcatgtatttgagagaacgatgggaggaaacatatttgtttacgttttcaactggtt 625

                                                                       
Query: 422 tgttttcccatggcccgatcgctcatgcagactctgtgaatcgggaagcatttttatggc 481
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 626 tgttttcccatggcccgatcgctcatgcagactctgtgaatcgggaagcgtttttatggc 685

                                           
Query: 482 tctcaatgcacaggactcctgccatttccaag 513
           ||||||||||||||||||||||||||||||||
Sbjct: 686 tctcaatgcacaggactcctgccatttccaag 717


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 924
Length adjustment: 10
Effective length of query: 510
Effective length of database: 914
Effective search space:   466140
Effective search space used:   466140
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)