NTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCTTTTATCTATGGCAAGGGTACAAGCTTTTTCTTTCTACCCC
TACTTAATTCCTTACTGAGAGATGCTTAAAAGACACATGGTGTTTGAATG
CCTAACATTGGAGTTGTCAATTCCTCCCAATTTCCTACATAAAGTGTAGA
AAAATCTATGTTCAAATCTGATATTAGAATTATTCAGATTCCATTATCCA
CAAAGGGCTGTAAATATTATTTAATTTATAGTTTATTATTAGTTATTTAA
AATATTTTATTAAAGAAGAAATTACTATTATTGGAATTACTTGTATGCAA
TTTAATTGTTCACTAGTTTTATTGATTTATTTTTTGTAAAGAACTGTGGT
CAGAAAACTATATCTTATTTTCTGGCTTTTCCTTCTATTACATATGGATA
AATAACAAAAAATAAGATTGCCAAAAAAGCAAATATCAGTGTGTTTTCAG
ACAATAAATATGTTTTCAAAGTTAGCACTAAGAAGTAAATAATATTATAA
NATTCCTCCCTTATTTTCTATACAAAGCTAAGAGAATATTTCAGACAACT
TTATGGGGGAAAGGACCCTCAGGATTAAAATAAAACTTTGGAAAAATCCC
CTTCATAAGTTTATACAACATATTTAAAAAATATTTAAATGGACCTTTTA
AATATAAAAATTTTATTTTACATTAATTTAAAATATGG

NCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGTTCTGTACCCCATTT
TTAGTAGGGTTGTTTGGTTTTCTGCGCATCCAACTTCTTGAGTTTTTTAT
ATATGTTGGATATTAGACCCCTATGAGACTTAGGATTGGTAAAGATCTTT
TCCCAATCTGTTGTTTGCATTTTGGTCTTATTGACAGTGTCCTGTGACTT
ACTTATTTTTTGCAATTTTATGAGGTCCCATTTCTTGATTCTAGTTCTTA
CAGCACAAGCCACTTGTATTTCGTCCTTTAATCTTTCCCCTGTGCCCATT
TCTTTGAGGATCTTCCCCACTTTCTCTTCTACAACTTTCCAACTCTCTGG
NTTAATGTGGAGTGATTTACCCACCTTATATTTGAACTTTTTACAACTAT
ACAAGAATGGACCAATTCCTCTTATTCTTGATGATACTCTCCTTCTTAGA
CCGCATCTTTTGTTACATATGCCTTCCTTCTTTCTATCGGATGCTCTTAT
TTTTTTTTGTTCAATAACTTGCTGTTTTTATCCGTCTTGTTTCCCCTTCC
TATATCTCTTCCTTCTTTCTCTTGTTTTTCCCTCCTTTTTTCCTCGGCTT
TTTTGCTTTCTTTTTTCCTCTTTTTCCTCTCTTTTTCCTTTTCCCTTTCA
CCTCTTTTTTTTTTCCCCCTCTCATCTTTATTTTTCTTTTTTCGTTCCTT
TTCTGTTCTAGACGTGTTATTTTACTCCTACTCTCGCTCCTATTTATTTT
TTATTTN

Query= MSMg01no456_h07.b1 MSMg01no456_h07.b1 CHROMAT_FILE:
MSMg01no456_h07.b1 PHD_FILE: MSMg01no456_h07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:28:17 2005
         (485 letters)



>mm_chr1_28677750_28678634
          Length = 885

 Score =  808 bits (418), Expect = 0.0
 Identities = 466/482 (96%), Gaps = 1/482 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccttttatctatggcaagggtacaagctttttctttctacccctacttaattcct 64
           |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattcctttcatttatggcaagggtacaagctttttctttctacccctacttaattcct 263

                                                                       
Query: 65  tactgagagatgcttaaaagacacatggtgtttgaatgcctaacattggagttgtcaatt 124
           |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 264 tactgagagatgcttaaaagacacatggtgtttggatacctaacattggagttgtcaatt 323

                                                                       
Query: 125 cctcccaatttcctacataaagtgtagaaaaatctatgttcaaatctgatattagaatta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cctcccaatttcctacataaagtgtagaaaaatctatgttcaaatctgatattagaatta 383

                                                                       
Query: 185 ttcagattccattatccacaaagggctgtaaatattatttaatttatagtttattattag 244
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 384 ttcagattccattatccacaaagggctgtaaatattatttattttatagtttattattag 443

                                                                       
Query: 245 ttatttaaaatatttt-attaaagaagaaattactattattggaattacttgtatgcaat 303
            ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 444 ctatttaaaatatttttattaaagaagaaaatactattattggaattacttgtatgcaat 503

                                                                       
Query: 304 ttaattgttcactagttttattgatttattttttgtaaagaactgtggtcagaaaactat 363
           |||||| |||||||||||| |||||||||||||  ||||||||||||| |||||||||||
Sbjct: 504 ttaatttttcactagttttgttgatttatttttcataaagaactgtggccagaaaactat 563

                                                                       
Query: 364 atcttattttctggcttttccttctattacatatggataaataacaaaaaataagattgc 423
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 atcttattttctggcctttccttctattacatatggataaataacaaaaaataagattgc 623

                                                                       
Query: 424 caaaaaagcaaatatcagtgtgttttcagacaataaatatgttttcaaagttagcactaa 483
           ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct: 624 caaaaaagcaaatatcagtgtattttcagacaataaatattttttcaaagttagcactaa 683

             
Query: 484 ga 485
           ||
Sbjct: 684 ga 685


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 885
Length adjustment: 10
Effective length of query: 475
Effective length of database: 875
Effective search space:   415625
Effective search space used:   415625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)