BAC Information

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BAC

Clone NameMSMg01-456O22
Chromosome1 (Build37)
Map Location 89,338,843 - 89,339,176
singlet/doubletsinglet
Overlap geneTnrc15
Upstream geneLOC100040414, Ptma, Pde6d, Cops7b, Nppc, 4930429A22Rik, EG620213, LOC208256, Akp5, Alpi, Akp3, Ecel1, 1700027L20Rik, Chrnd, Chrng, Eif4e2, Efhd1, LOC100040600, LOC100040591
Downstream gene3110079O15Rik, Ngef, LOC620454, Neu2, Inpp5d, Atg16l1, Sag, Usp40, LOC545344, LOC677561, Ugt1a@, Ugt1a10, Ugt1a9, Ugt1a7c, Ugt1a6a, Ugt1a6b, Ugt1a5, Ugt1a2, Dnajb3, Ugt1a1, LOC100040766, 6430706D22Rik, LOC100038822, Trpm8, Spp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-456O22.T7 (MSMg01no456_o22.b1)MSMg01-456O22.TJ (MSMg01no456_o22.g1)
ACCAG543118AG543119
length852792
length of high quality
(start - end)
247 (68 - 314)335 (78 - 412)
definitionCHROMAT_FILE: MSMg01no456_o22.b1 PHD_FILE: MSMg01no456_o22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:56 2005CHROMAT_FILE: MSMg01no456_o22.g1 PHD_FILE: MSMg01no456_o22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCTAGAGGATCCGCGG
AATTCAGAGCCTTCCCGTATGCTAGGCAGTTGACATTCAAGTTGTTTATA
GCTATCAGCCTAGTCATCAGTCTTTTATTTGTTTATTTTGAGACAGGGTT
TTATTATGCAGCCGAAGCTGGACTCAAACCCCTGATCCTCTTGCCTGTGC
TTCTGAGTGCTGGGATTTCAAGCTGTGCTGCTATCCTTGACTGCAGTCAT
TTATTTTCTTTTTGACAGGGACTCGTGTGGTCTAAGCTGGCCTTGGACTT
ACTATGATGCCTGGTACGACCCTGAATTCCTGAGGGTGTGAAGATAGATC
AGTGTTCTATCATTCGATTATTATGAGACTTTGGTTTTCTATCCTAAGCA
CAGGTAGATGATTTTTTCCCCCCCCGCCGCGTCCGTAGTTGATTTGGTTT
TCCCTCTCTTCTCGCCTTTATTTTTCATCCCATTTTATTTTTTTCTCCCC
TCTCCTATCCCTTTGTTTCTCTTATCTCTTATTTTTCTTTCTTCCCTTTT
TTTTCCCTTTCTTCTTTCCCTTCTTTTTTCTTCTTTTTCCCCCCTTTTTT
TATTTTTTTTTTCTATCCATATTACCCTCCCTCTAATTCTTTTTATTTCT
CTTTTACACCCTCCTTTTTTTTCTTTTCCTACCTCCCTTTTTTATTTCTT
TTTATTCTTACCTTTTATATCACTCCCTTCCACCCCTATATCTCTTATTT
TTTTTCTCCTTTTTTCCCTTTGATTTACTCACACTAGTTTCCTTCCCTTC
CTATTTTATTCCGCTTCCTCTTCTTTTTTTATTTTCCCTCCCATCTTTTC
TN
TTTACTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTGTGGGGGCCAATCTGCACTGTC
CACTAAAAACTTGACTCTTGTAGCATTACTTGAATTGCTATGGAAAAAAA
AAAAAGTCCGATAAAATGATGCTCAAATAAATTGTGAGCAGTTACCAAGG
ATTACCTGCCAGCTGAGGCTGCCTTGATGAAGTGCAGGACAAAGGAAGCC
ATTGTTCCCCATCACCCATTTCCTGGGAAATATTTGCAGCTACACTATCA
TGTGTAAGAGAAAGTTACATGTCTTTTTTGGGAACCAAAGTCAGCCTGCC
CAATAGAGGACCAAAGCAGTGTGACATCATTTCCTCTTTGCTTTGGGAGG
TGATGGAAATTGTGGAAGACCCACCACATCTGCTTTGTATGTGCCTAAAC
TGCACATATATTTCTTCTTTTTCTCGATCAGCATATTTGTCATCATACAG
CTACCTTTTTATTATGTCCTATGTTTCCTTCCCACCCTTATATGAACCAT
TCTTTTTTTTTTTTTTTTCCTCATTTTCTTCCCTTCTTACTTTTATTTTT
CCTTCTCTTTACCATCCCTTTTACATTTCATTTCTATCCTCTTTTACCAA
TTCATTTCATTTTATTCTTTTTCTCCTCTTCTCCCACCCCTTCTTTACCC
CCCCACTTATTTGTCTCTTTTATCCTCTATCTTTCCCCCCTCTTTTCCCT
TCCCTTTTTTTCTTTTACTTCTTCCTTTTTTTCTCTCTCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no456_o22.g1 MSMg01no456_o22.g1 CHROMAT_FILE:
MSMg01no456_o22.g1 PHD_FILE: MSMg01no456_o22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:28:56 2005
         (335 letters)



>mm_chr1_89338643_89339376
          Length = 734

 Score =  609 bits (315), Expect = e-179
 Identities = 330/335 (98%), Gaps = 1/335 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtgggggccaatctgcactgtccactaaaaacttgactcttgtagcattacttgaattg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtgggggccaatctgcactgtccactaaaaacttgactcttgtagcattacttgaattg 260

                                                                       
Query: 61  ctatggaaaaaaaaaaaagtccgataaaatgatgctcaaataaattgtgagcagttacca 120
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctatggaaaaaaaaaaa-gtccgataaaatgatgctcaaataaattgtgagcagttacca 319

                                                                       
Query: 121 aggattacctgccagctgaggctgccttgatgaagtgcaggacaaaggaagccattgttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 aggattacctgccagctgaggctgccttgatgaagtgcaggacaaaggaagccattgttc 379

                                                                       
Query: 181 cccatcacccatttcctgggaaatatttgcagctacactatcatgtgtaagagaaagtta 240
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 380 cccatcacccatttcctgggaaatatttgcagctacactgtcatgtgtaagagaaagtta 439

                                                                       
Query: 241 catgtcttttttgggaaccaaagtcagcctgcccaatagaggaccaaagcagtgtgacat 300
           |||||| |  ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 catgtcatagttgggaaccaaagtcagcctgcccaatagaggaccaaagcagtgtgacat 499

                                              
Query: 301 catttcctctttgctttgggaggtgatggaaattg 335
           |||||||||||||||||||||||||||||||||||
Sbjct: 500 catttcctctttgctttgggaggtgatggaaattg 534


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 335
Length of database: 734
Length adjustment: 9
Effective length of query: 326
Effective length of database: 725
Effective search space:   236350
Effective search space used:   236350
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)