BAC Information

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BAC

Clone NameMSMg01-457C04
Chromosome1 (Build37)
Map Location 148,426,842 - 148,427,214
singlet/doubletsinglet
Overlap geneB830045N13Rik
Upstream geneLOC383571
Downstream geneLOC100043240
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-457C04.T7 (MSMg01no457_c04.b1)MSMg01-457C04.TJ (MSMg01no457_c04.g1)
ACCAG543273AG543274
length1,804771
length of high quality
(start - end)
---369 (84 - 452)
definitionCHROMAT_FILE: MSMg01no457_c04.b1 PHD_FILE: MSMg01no457_c04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:13 2005CHROMAT_FILE: MSMg01no457_c04.g1 PHD_FILE: MSMg01no457_c04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGTTGGTGTGTTCTAGCANTCGTTCGTAGTATCGGGTCTATCACGCTCAC
ATGGGTGTCATATATATGTATAATAATAAGAAGATAGACTGTAGGTACAT
ATAATTCATATGGTACTGGGCATCCTCCTCCGCGCGCTCNCTNNTCGACG
GGNCTTTCTGTCTTGTTTCGCCTTGTCCNCGTCTGATACCGATCGCATTA
CCACCATCGTATGGAGTTACCTGCACAACAACGTNCTCGACCTTACTTCC
ATGACATNCTTACTTATGTGACCTGGACCAACTGCACGTCTGATCGCCAC
GCTCTATATACCTCGTATGCTTCTTATTACCGAGATGACGATAAGCGTCT
CGTAGATAAATGTATATTCCCGTCGAGATACCATCCCAATATGNAATCGG
GCAAAACAATGATCAGACAAATAGCGTGCCANAAGAGAATCGTTTCTNTC
TTACTAAATCTATAACACACTCATCCTATACTTCAGTACTCNCTCTCGCN
CACTATCACTAGCGGTCGCTCGGGCGTATTGGNTGATGCGTGTGTGGTGC
GTGTCGCGGCTGGAGCAGTCGCGAGAGGTGACACACGTCATATCTGAGAT
GGTGCATCGTAGTGAATCGCGCCGTGCTTGAGATGACCGACGAGAGACAC
ACGAGATACGATAGTGTACTAACGTATAGCGGTAGCCGATACGTGCTCGT
ATGGCAGTGATCACTGTTGAGAGTATGAGGCGAAGGAGCCGGGTATCACT
TATGACTTTCTGCNGTAAATTAGCGCAACCTCATGTACTCATTATGTAAG
TTTGCAGATATAAGAGAGAAGCGATGTCTGATGCACTATGACAGAGAAAT
GAGGAGTGAGATGATGTAGCGAACTAGCTGATGCTACGAATCGCGATAGT
AGTATAGTGACAGCTGCGATGCCGCATATCGCACGCACCACACCATACAT
TATCGTTACAAGACATCACGACACTACTAACTCACANACAATCCTCACTC
ACGTCGATATCGGCGCCACATACATCTACACACGTACTGCTGCGTCATTC
GTCGATTCTACCACGACTGACACTTACTCCTACGATATACATAAGATTGA
CATCCACACATGGATACTCATGCGCACGCTGCCACGCGCACNGTACATCT
ACTAACGCATAACGATACCANTACGCTGTATCACGAACACGATTATATAT
GATGAGAGACGCGACTGTGTATAATCACCAGACGCCACGACAGTACGCGA
AAGCAATTATCACGACATTATACGCATCTATCTACCGTCTGCACATCACG
CTATGCGATCTCGTGGACATATAGCACAATACATCACGCGCGCAGACACG
ACGGGATATGACGNGACGGTAGTATGAAGTGATAACGCTGGGCGCATATA
TCGCACCGATAACTATTGATTGTANGCGCACGATNTNAGTCCTGATGCAG
AGTCATAACTCGATCACTCACAGCGAAGCTATGCTGAGCGCCTACAGCTN
TGTATCGAACTGAGCCGCATAGCGAGATCAGACTGTCGCTATCTGAGCAT
AGCCGTAGTCTGCGTGACCTCGNGTCCGCTCGATACGAGCGTACGCGACG
ACGTAGTCTCTGCGCTACTCNCTACGCAAGTANCTACTCTACTCGCGTTC
GTACTCTTCGCTCCGCCATGTCGACGCGCGCCCGCAGCTGCTAGATGTGC
GATCGACGCGCTCTCNCTATATATCGCTGACTACCCTCTTCTGTGTGCGA
TTCGACGTATGCTCTTTCCTNCGTATGTAGAGTGCACTGACGCTCGGATN
ATGN
NNNNCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATGCCTGTTTTTGCCT
TCTTGCAAGGCTCCTTATATCAGTTTATTCATCAAAAAAAAAAAAGTGGG
AGAGGAGGCATTGCTGATTTGTTTGTGAACACCACGAAACACCAGCCTTT
GTTTTTGGTACCCATAGCCAACTGCATTAAGTTAAAATAGAACACAATAT
TACTTAAGTACTCTAAAGTGTGAAATTAAAAGCCTCCTTAGAGATTAGCT
TCAAACAGATTTATTCCCTGATAATTAATACTCCCATTAAAATGTGCTTT
ATATTAAATTGTTTGGTCTGTGTATAACATCTCGTAACACAAATATGAAA
TTAAGATAGCAAAATAATAATGAATAATGCCTACTTGGATGGCCATTGCA
GTAATGAGAATATATGATGAGAGCCTCTTCTATAGAGTTTTTCAATAATC
TGGTCAAGAGAATTTATCATCCTTTTAATCTCACATTTTCTCTGTTTTTA
GGAATTTTGGTTATTCTATCGCTTAATCCTATATAATAAAGATGGCTTTT
TGCACTATTATAGCTCTTATACCTCCTCTTTCCTCTGTTTAACCTTCTTG
GGTCCCCGACCCTCCTTATCTCTAATTGCCTCTTTAATTTTTTATTTTGG
TCTTTTCTCTCTCTTTTACCGCGTTTATTTCTGTCCTTTTTCTCTATATT
CTCAAGTTCTCATTTTTATTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no457_c04.g1 MSMg01no457_c04.g1 CHROMAT_FILE:
MSMg01no457_c04.g1 PHD_FILE: MSMg01no457_c04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:29:13 2005
         (369 letters)



>mm_chr1_148426642_148427414
          Length = 773

 Score =  679 bits (351), Expect = 0.0
 Identities = 366/373 (98%), Gaps = 4/373 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   catgcctgtttttgccttcttgcaaggctccttatatcagtttattcatc----aaaaaa 56
           ||||||||||| ||||||||||||||||| ||||||||||||||||||||    ||||||
Sbjct: 573 catgcctgtttctgccttcttgcaaggcttcttatatcagtttattcatcaaaaaaaaaa 514

                                                                       
Query: 57  aaaaaagtgggagaggaggcattgctgatttgtttgtgaacaccacgaaacaccagcctt 116
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 aaaaaagtgggagaggaggcattgctgatttgtttgtgaacaccacgaaacaccagcctt 454

                                                                       
Query: 117 tgtttttggtacccatagccaactgcattaagttaaaatagaacacaatattacttaagt 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 tgtttttggtacccatagccaactgcattaagttaaaatagaacacaatattacttaagt 394

                                                                       
Query: 177 actctaaagtgtgaaattaaaagcctccttagagattagcttcaaacagatttattccct 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 actctaaagtgtgaaattaaaagcctccttagagattagcttcaaacagatttattccct 334

                                                                       
Query: 237 gataattaatactcccattaaaatgtgctttatattaaattgtttggtctgtgtataaca 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 gataattaatactcccattaaaatgtgctttatattaaattgtttggtctgtgtataaca 274

                                                                       
Query: 297 tctcgtaacacaaatatgaaattaagatagcaaaataataatgaataatgcctacttgga 356
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 273 tctcgtaacacaaatatgaaattaagatagcaaaataataatgaataatgccaacttgga 214

                        
Query: 357 tggccattgcagt 369
           |||||||||||||
Sbjct: 213 tggccattgcagt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 369
Length of database: 773
Length adjustment: 9
Effective length of query: 360
Effective length of database: 764
Effective search space:   275040
Effective search space used:   275040
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)