NAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCCTCCCTTCCTGGGTTCTTCCCCAGGGCAAGATGAGGGGGAA
CAGGATGGAGCATTAGCCAAGATAGCACTCCTAAATTATTGCTTTGAGAT
GATTTATTAATACCAATAGGGCGATGAAACCAGAAACTTCTGGGTAAACA
AAACTTCATTTTCCTATCTGATTTTTTTTCTTTTTAAAAATGACACTAGA
GTAATTTGGAAAACAAAAACAAAAATACCTCCCACCCCCGAACCAGGGTA
CTTTAATAGAAAGTACCCTCCCATCCTGCAACCTGGATATTAACTGTTAA
GAGTAAACGTGTTTGTGCATGTGTGTAAACCAAATGATGGTAAGGTGAAG
GTAAGGTATTTGACTAAACAAACAATACATCTTCTACTTTCTAAAACATT
AGAGGTGCAAATGTAACCAAAGTGTAGGTTTTGAAAACAAAACAAAGCCT
GGAGGAGGTTGCACATGCCTTTATTAATCCCAGCACTTGGGAGGCAGAGG
CAGGCATATCCCTGAGTTCGAGGCCAGCTTGGTCTACAGAGTGAGTTTCA
GGGTAGTCAGGGCTTCACAGAGAAACCCTGTCTTGAAAAGCATAACATAT
TTAAACTCTTAAAGGTATTTGAGGTCTCTAATCCCACACATGTTATAATG
TGCCCCATGTTCATTCAGGGTAATTGAGGTGACAAAGTTTCTATCA

NNNAACGATGCTACCGTTAGTGCTGGAGGGCGGCTGGTCTCTCTAXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXGTCTCACCTGAGGAATACACGAA
TGGCAGAGAAGCACCTGAAAAAATGTTCAACATGCCTTAATCAGTCAGGG
AAATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATG
GCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGCATGTGGAGA
AAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCAC
TCTGAAAATCAGTCTGACGGTTCCTCAGAAAACTGGATATAGTACTACCG
AAGAATCCAGCAATACCTCTCCTGCGCATATATCCAGAACATGCCCCATG
TGGATATTAACGACACTTGCTCCACTATATTAATAGTGACCTTATTTATA
ATATCCAGAATCTGGAATGAGTCCAGATGCCCCTCAACAGAGGAATGGAT
ACAGAGAATGTGGTACATTTACACGATGGAGTACCACTCAGCTATTATTG
AGAATGAATTTATGAGATTCCTACCCAAATGTAAGGACCTGGAAGGCATT
TTCCTGAATTAGGGTATTCTTTCACAAAGGAACTTCCCTTTAGTGTACTC
ACTGAAAATTGGAAATGTGGCCCATAACCTTTGTTGCCCGCGATATAATA
ATTCCTTTTCCCAATACAATGAATTCCCTTAAAATGTAAAAACGATCGTT
TCCN

Query= MSMg01no457_d20.b1 MSMg01no457_d20.b1 CHROMAT_FILE:
MSMg01no457_d20.b1 PHD_FILE: MSMg01no457_d20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:29:23 2005
         (537 letters)



>mm_chr1_52287391_52288330
          Length = 940

 Score =  980 bits (507), Expect = 0.0
 Identities = 529/539 (98%), Gaps = 7/539 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccctccct---tcctgggttcttccccagggcaagatgagggggaacaggatgg 60
           ||||||||||||||     ||||||||||||||||||||||||||| |||||||||||||
Sbjct: 204 ggaattccctccctaaa--ctgggttcttccccagggcaagatgagagggaacaggatgg 261

                                                                       
Query: 61  agcattagccaagatagcactcctaaattattgctttgagatgatttattaataccaata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 agcattagccaagatagcactcctaaattattgctttgagatgatttattaataccaata 321

                                                                       
Query: 121 gggcgatgaaaccagaaacttctgggtaaacaaaacttcattttcctatctgattttttt 180
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 322 gggcgatgaaaccagaaacttctaggtaaacaaaacttcattttcctatctgattttttt 381

                                                                       
Query: 181 tctttttaaaaatgacactagagtaatttggaaaacaaaaacaaaaatacctcccacccc 240
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 382 tctttttaaaaatgacactagagtaatttggaaaacaaaaacaaaaatccctcccacccc 441

                                                                       
Query: 241 cgaaccagggtactttaatagaaagtaccctcccatcctgcaacctggatattaactgtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 cgaaccagggtactttaatagaaagtaccctcccatcctgcaacctggatattaactgtt 501

                                                                       
Query: 301 aagagtaaac--gtgtttgtgcatgtgtgtaaaccaaatgatggtaaggtgaaggtaagg 358
           ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 aagagtaaacatgtgtttgtgcatgtgtgtaaaccaaatgatggtaaggtgaaggtaagg 561

                                                                       
Query: 359 tatttgactaaacaaacaatacatcttctactttctaaaacattagaggtgcaaatgtaa 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 tatttgactaaacaaacaatacatcttctactttctaaaacattagaggtgcaaatgtaa 621

                                                                       
Query: 419 ccaaagtgtaggttttgaaaacaaaacaaagcctggaggaggttgcacatgcctttatta 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 ccaaagtgtaggttttgaaaacaaaacaaagcctggaggaggttgcacatgcctttatta 681

                                                                      
Query: 479 atcccagcacttgggaggcagaggcaggcatatccctgagttcgaggccagcttggtct 537
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 atcccagcacttgggaggcagaggcaggcatatccctgagttcgaggccagcttggtct 740


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 940
Length adjustment: 10
Effective length of query: 527
Effective length of database: 930
Effective search space:   490110
Effective search space used:   490110
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)