BAC Information

Click to search

BAC

Clone NameMSMg01-457E20
Chromosome1 (Build37)
Map Location 67,660,868 - 67,661,235
singlet/doubletsinglet
Overlap genenone
Upstream geneRpe, 1110028C15Rik, Acadl, Myl1, LOC100043192, Lancl1, Cps1, Kif22-ps
Downstream geneErbb4
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-457E20.T7 (MSMg01no457_e20.b1)MSMg01-457E20.TJ (MSMg01no457_e20.g1)
ACCAG543401AG543402
length789764
length of high quality
(start - end)
426 (51 - 476)368 (83 - 450)
definitionCHROMAT_FILE: MSMg01no457_e20.b1 PHD_FILE: MSMg01no457_e20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:27 2005CHROMAT_FILE: MSMg01no457_e20.g1 PHD_FILE: MSMg01no457_e20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNTTTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCACTCCTATTCACTCCCATTCTCGGGGTGTAATAGTGGGGT
GATGGGCAAGCAACGAATCGGGAGCTGTCACGCCATATCAGGTGCTGAAA
CGTCACTCTGCGGGTTATAAAAGCAGCGCCATTTTCCCGGTTCGGGATCT
TCCTGAGAAACAAGCAATAAAGCTCTTGCCACGGAAGATTCTAGTTTGTT
GCGTCTTTCTTGCCGGTCGAGCGGGACGCAATAACTAGCTGCAGCTTTTT
TCCCCCAATGTGTACATTTCCTATGTTTTCCACAGGCAATCTCCTTTAAT
CTCCCTCCCACTACTTGTCCTAGACCCCAACTTCCACAGGCATCCACTGC
TAACCCAAGGGCTGTTCTTCCTAGGGCAACAAATAGGCTGAAGGCAGACC
CACACCTCCCTAACTACTCCTGAAACCCTACCCCCCGAGACTTGTCCCAA
GCTCTATAGAAGGAAAACTGATGTGGGCCCCCTTTTCCTCTTGACCCCTC
ACCAAAAGGAACACAAAGAACTTCTTTAAAAGGCTTCCTTTCCCCAAATT
ACTTTTAATTACCTGGGGCTCCAACATTATAAGGGTATTCCCCAACCCCT
TGGACAACCCCCTTCAAAATCGTGAAACCCTTCTTCTTCCCCTTCCTAAA
AATTATAGTAGAGATATACCTTCTCCCCTCGAAGTAACACCATTTTTTCT
CTACTTGTTGTATCCTTATTTATTTTCTTTGTCCTTTTT
NNNNCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGCACTTTGACTTCAC
ATCACTTCAATCAGAAAAGCAAAAGTCGAAGAACAAATGCTAAGGTGTTC
CCTCCCTGGAATCTGAATTTCAGCATTCATAACTCTGCCATGGGTTGTGT
ATAAGCAGCTTTGCTGAAGGTCTGCATCTCCAGAAACCCTCAGGGCAGCA
CTGAATGACCTCAGGATCAGCCTGTGCTAAGAGTGATTAGGAGCAAGACT
AAATTTTCCCCCAGGATTACTGGAATCTAAAGGTTAGATATTTGAAAGAA
ATAATCTGAAGAAAACTGTATTAAGAGAGTTTTCAGATATTGGGTCATAA
GGAAAAGAAGTAGTGTTATTAGTGTTACTAAGTTGTGTGTGTGTGTGTGT
GTGTGTNTNNNNNNNNTNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTNTTTTTTTTNTTTTTTTTTNTTTTTTTTTTGTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTGTTTTTTTTTTTTTTTTTTTGTTGTTTTTT
TTNGTTTTTTGTTTTGTTTTTTTTTGTTTTTGTTTTGGGGGTTTTTTTTT
GGGTTGGTTTTGTTTTTTTTTTTTTTTTTTTTTTTTTGNGGGTGTGTGTT
GGTGGTGTTTTTTGTTTGTTTTTTTTGTTTTGTTTGTTGTTTTGGTGGTG
TGTTTGGTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no457_e20.g1 MSMg01no457_e20.g1 CHROMAT_FILE:
MSMg01no457_e20.g1 PHD_FILE: MSMg01no457_e20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:29:27 2005
         (368 letters)



>mm_chr1_67660668_67661435
          Length = 768

 Score =  696 bits (360), Expect = 0.0
 Identities = 366/368 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggcactttgacttcacatcacttcaatcagaaaagcaaaagtcgaagaacaaatgcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 caggcactttgacttcacatcacttcaatcagaaaagcaaaagtcgaagaacaaatgcta 509

                                                                       
Query: 61  aggtgttccctccctggaatctgaatttcagcattcataactctgccatgggttgtgtat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 aggtgttccctccctggaatctgaatttcagcattcataactctgccatgggttgtgtat 449

                                                                       
Query: 121 aagcagctttgctgaaggtctgcatctccagaaaccctcagggcagcactgaatgacctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 aagcagctttgctgaaggtctgcatctccagaaaccctcagggcagcactgaatgacctc 389

                                                                       
Query: 181 aggatcagcctgtgctaagagtgattaggagcaagactaaattttcccccaggattactg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 aggatcagcctgtgctaagagtgattaggagcaagactaaattttcccccaggattactg 329

                                                                       
Query: 241 gaatctaaaggttagatatttgaaagaaataatctgaagaaaactgtattaagagagttt 300
           |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 gaatctaaagggcagatatttgaaagaaataatctgaagaaaactgtattaagagagttt 269

                                                                       
Query: 301 tcagatattgggtcataaggaaaagaagtagtgttattagtgttactaagttgtgtgtgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 tcagatattgggtcataaggaaaagaagtagtgttattagtgttactaagttgtgtgtgt 209

                   
Query: 361 gtgtgtgt 368
           ||||||||
Sbjct: 208 gtgtgtgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 768
Length adjustment: 9
Effective length of query: 359
Effective length of database: 759
Effective search space:   272481
Effective search space used:   272481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)