BAC Information

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BAC

Clone NameMSMg01-457F24
Chromosome1 (Build37)
Map Location 11,622,198 - 11,622,549
singlet/doubletsinglet
Overlap geneA830018L16Rik
Upstream geneCpa6, LOC433271, C030045D06Rik
Downstream geneLOC665262, LOC100039709
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-457F24.T7 (MSMg01no457_f24.b1)MSMg01-457F24.TJ (MSMg01no457_f24.g1)
ACCAG543457AG543458
length1,002785
length of high quality
(start - end)
---351 (86 - 436)
definitionCHROMAT_FILE: MSMg01no457_f24.b1 PHD_FILE: MSMg01no457_f24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:33 2005CHROMAT_FILE: MSMg01no457_f24.g1 PHD_FILE: MSMg01no457_f24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNTTTGGGGNNNNNNNNNNNNNNNNNNNGGNNNNNNNNNNNNNNNNNNNN
ACCTAAAACCCTTCCCCTTNCCCGANCTAAATAACCCNNAACCTTTCCAC
CNNAAAANTTTTTTCTCCCCCAAAAAAAGGAAAAATCCCCCCGGCCGGGG
GNNAAAAAAATTTTNCCCCNCCCCANNNAATTTTCCACCACTTCAAAATT
TTTCTTGAAAAAAACCACTTTAAANGACATGGTTTTTAACCATTTTCTTA
AANNCCCATCAAAAAAAAAATGGCAAAACCCCAAAATTAATTTTTTTTAA
ANNNNNNTGTGAACCCTAAAACCCCTGTGGAGAAAGGGGCCAAAAATCCC
CCCCGGGGGGCCCCCTTATGGGCCAGTAGGGGGGAGAACCTTCTCCCCCC
TCCAGTGTGGTGGTTGTGGGTGGGGGGGTGGAGGTAGTGGGGGGTGGTGT
AGTGGGAGTGGGTGTGGGTGGAGTGGAGGGGGGTGAGGGGTGGGGTGGGT
GAGGGGAGGGAGAGTGGGGGTGGGGGGGAAAAACATTCCCTCCCCCCCCC
CCCCCCCCCCCCCACAAAAAAAAAAANNNCCCCCCNCCCTCCTCCACCAA
AAANNNNNCCCCCCCCCCCCCCCGCGCNNCNNNCNNNGGNNNGNNAATTN
NTTTTTTTTTTTTTATANNATAANAAAAAANAAAAAAAAAATCCTTCCCC
TCCCCCCTCCCCCACACCACCCCCATAAAAAAAAAAAAAAAAAAAAAACG
GTGGGGGGGNNTTTTCTCCCCTCCCCNNNNNNNNNCCCTCCTCCCCCCCC
TCCTTTCTANCTATANCTACACACCCCCCCCCACCTCTCCTCNNCGTTCT
NTTCNCTTTNTTCNTNCCCTTCCCNNNTNNCCTTTCNCCCNCNNNNCTCC
TTTTTTCTTCCTTTTCTCCCAANCCCCTCCTCTCCACCCCAAAAAACAAA
CACAACCCCACTANCCACCCCCCCCTCACATCTTTAGGGTATAGTGTGTA
TG
CGAATTTCACGAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGACACCTTTCCTAC
CCTCCACAGGCGTGGTATGCATGCGGTGCACCTGCAAAACACCCAAGCAC
ATAAAAAGAAGAAATGTTTTAATAAAAAATGTGTGTACTAGAATGTCACG
TGAAACTTAAATAGGACTTTGTTTTTAGAAATCTACAATTATTCTGCATG
ATGCAGGATATTTAACATCCCTGGCATCCGCATAGTAGAAATGAGTAGTA
ATCCTAGATCTTTGAGCAAGTGAAGATGCCTGCACTATGTACAGGCCTCC
TGAGCTGAATGCACTTCTCTTGGAGAAACTTCCACACTTACCAAACTATA
AAGATGGAAGAAGATAAATGTACTTCATAATACTTGTTCTAGAGAAAATG
GAGTACCAGCCGTTCTGAATGGGCTAGATGTGCAATTATGTTGCACACAC
ACACCCAAACCATTGTAGAAAAGACTGCTGTTATACTGTGGACAATATAT
TTAGGGTATGCCAAAAAAATTTAAATGGTTATTTATTATAGAAATATCCC
CCCCCCCACCTGAAACAATGGGATAAAAAAAACACCCCCCTTGGTGGGTT
GGCGTTTTTTCCCCACAAAGACTTGGGGGGGAATTTTGTGTATTCCCTTC
TTGTGAATTTTTAACGGAAATTTATTCCCGGGCCCGGGGGCTGGGAACTA
ATACCTTTTTTAAATATAAACACTGGAGTATGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no457_f24.g1 MSMg01no457_f24.g1 CHROMAT_FILE:
MSMg01no457_f24.g1 PHD_FILE: MSMg01no457_f24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:29:33 2005
         (351 letters)



>mm_chr1_11621998_11622749
          Length = 752

 Score =  603 bits (312), Expect = e-177
 Identities = 342/352 (97%), Gaps = 1/352 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agacacctttcctaccctccacaggcgtggtatgcatgcggtgcacctgcaaaacaccca 60
           |||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 552 agacaccttttctaccctccacaggcatggtatgcatgcggtgcacctgcaaagcaccca 493

                                                                       
Query: 61  agcacataaaaagaagaaatgttttaat-aaaaaatgtgtgtactagaatgtcacgtgaa 119
           |||||||||||||||||||||||||||| |||||||||||||||||||||  ||| ||||
Sbjct: 492 agcacataaaaagaagaaatgttttaataaaaaaatgtgtgtactagaataacacatgaa 433

                                                                       
Query: 120 acttaaataggactttgtttttagaaatctacaattattctgcatgatgcaggatattta 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 432 acttaaataggactttgtttttagaaatctacaattattctgcatgatgcaggatatcta 373

                                                                       
Query: 180 acatccctggcatccgcatagtagaaatgagtagtaatcctagatctttgagcaagtgaa 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 acatccctggcatccgcatagtagaaatgagtagtaatcctagatctttgagcaagtgaa 313

                                                                       
Query: 240 gatgcctgcactatgtacaggcctcctgagctgaatgcacttctcttggagaaacttcca 299
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 312 gatgcctgcactatgtacaggcctcctgagttgaatgcacttctcttggagaaacttcca 253

                                                               
Query: 300 cacttaccaaactataaagatggaagaagataaatgtacttcataatacttg 351
           |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 252 cacttaccaaactataaagatggaagaagataaatgtactccataatacttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 351
Length of database: 752
Length adjustment: 9
Effective length of query: 342
Effective length of database: 743
Effective search space:   254106
Effective search space used:   254106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)