BAC Information

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BAC

Clone NameMSMg01-457G16
Chromosome1 (Build37)
Map Location 128,217,669 - 128,217,931
singlet/doubletsinglet
Overlap geneE030049G20Rik
Upstream geneActr3, Slc35f5, Lypd1
Downstream geneLOC383559, Mgat5, LOC667090
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-457G16.T7 (MSMg01no457_g16.b1)MSMg01-457G16.TJ (MSMg01no457_g16.g1)
ACCAG543489AG543490
length759761
length of high quality
(start - end)
170 (324 - 493)245 (80 - 324)
definitionCHROMAT_FILE: MSMg01no457_g16.b1 PHD_FILE: MSMg01no457_g16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:36 2005CHROMAT_FILE: MSMg01no457_g16.g1 PHD_FILE: MSMg01no457_g16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NATCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGAGACGATCCGC
GGAATTCAGATTTTCCCAACCAGCTGTTGTACTGGGCACTTGTAATCTCA
GCTCATAGTGGTCAGTGGTCATCCACAATCCTAGTGAACTTGGCAAATCT
TCAGCTTCAGTGAGAGAGCATCTCANAGAGTGCACTACCACTGTTGTACC
ATTGGGTGTCTTGCTGGGGGGTCATTGCTATATTTTGTGGGCTGCACAAT
ACTACTGGTTGCTTTTTCCTCTTGTCAGCTTGCAAAAAAACACATTAGGG
TACTATGGGAGCTATTTTTCTTTAAGAAGGCTTCCAAGCCAGTTCCAGCT
CAATTCCTCAAATTTCTCGCTCTGAAGAACGTGGTGTCTTCAGCAGTAGA
ATTCTTACCTTCAAGTCCTGGGAAGCAATCTATGGCTCTAGGAATGGGCT
CTATTGTTTGGGGGAGTTTCTTCCTCCCCAGAGCCTTGTGCAGTCTGTGT
ACAACAGGAGGAGTTGTTGGGTTGTAATATTAGGCTGTACATTCCATTTC
CCCTTCTTCTTTTTGTTTGTTTTTTACTCTATTTTCCTCTCCTCTTCTTA
CCCCTATTTTTTCTTCTTTCCTTTTTTTATGTTTCATACTTCTTTTTTTT
TTTTTCATCCTCTTCATCTTCCCTTTCTCCCTTCTCTCTCCTATCTTCCT
TTTCCTCTTTTCTCTCTTCTTCTCCATCTTTTCCTTCTTTCTTCTTTTTT
TCTCTTTTA
GGGGCCCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTTCATGGGAAAGCAATTAT
AGATTGTTTATCTGTATATTCTTTGCAATGAACACATAACACACAGACAT
GCACACACACACACAAAGTTATTGGGAAGAACACTATTAATGATGAACAA
CAGGATTTGGGTAGAAGGTTCTTTGATACAAATATAGCCCAGTAAAATAC
TACTTACTGAATCATATAGTAACTTGACCTTCATAGTTTGGGGGAAATTA
TCCACCAAAATTAATCCTGATACTGTATTATGTGGAGGTTCACTAATAAA
TAAGCACATATACAACTAGGAAAGATTCACTCACCATGTGATGGCAATTC
AGAAGGAGGGTCAGCTATCCCACACGCATGATGCTGACCTTGTATGAAAA
TAGAGGAAATTCCACAGGGGGATGGAGGTTCTGGAAAGCATATCACAGGA
CTCTCTAAAGATGTTTACAAATCTCTGACACAGACCCCTCTTGTATAGGG
TGAAGACAAATAATTATGATACTTGTTCTGCCCCTTTTATGTATTTTTTT
ACCAGTGTTGAAACCCTGACCTTCTTGTAACTATTCTTTTTTTCTCCTAT
ATTTATTCCACATTTTTTTTTTTTTTTTTTTTTCCAACCCCTATTCCCCT
AAAGTTTACCTCCTTCTTTTCCTTTGCTTTTCCACTTCTCCCCTTCCTTT
TTCTTTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no457_g16.g1 MSMg01no457_g16.g1 CHROMAT_FILE:
MSMg01no457_g16.g1 PHD_FILE: MSMg01no457_g16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:29:37 2005
         (245 letters)



>mm_chr1_128217487_128218131
          Length = 645

 Score =  371 bits (192), Expect = e-107
 Identities = 238/264 (90%), Gaps = 20/264 (7%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgttcatgggaaagcaattatagattgtttatctgtatattctttgcaatgaacacataa 60
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 tgttcatgggaaatcaattatagattgtttatctgtatattctttgcaatgaacacataa 242

                                                                       
Query: 61  cacacagaca---tgcacacacacacaca---------------a-agttattgggaaga 101
           |||||| |||   | ||||||||||||||               | ||||||||| ||||
Sbjct: 243 cacacacacacact-cacacacacacacacacacacacacacacacagttattggaaaga 301

                                                                       
Query: 102 acactattaatgatgaacaacaggatttgggtagaaggttctttgatacaaatatagccc 161
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 ccactattaatgatgaacaacaggatttgggtagaaggttctttgatacaaatatagccc 361

                                                                       
Query: 162 agtaaaatactacttactgaatcatatagtaacttgaccttcatagtttgggggaaatta 221
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 agtagaatactacttactgaatcatatagtaacttgaccttcatagtttgggggaaatta 421

                                   
Query: 222 tccaccaaaattaatcctgatact 245
           ||||||||||| ||||||||||||
Sbjct: 422 tccaccaaaatgaatcctgatact 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)