BAC Information

Click to search

BAC

Clone NameMSMg01-457L10
Chromosome1 (Build37)
Map Location 69,930,096 - 69,930,373
singlet/doubletsinglet
Overlap geneSpag16
Upstream geneErbb4, LOC667842, EG241084, Ikzf2
Downstream geneA830006F12Rik, LOC100043210
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-457L10.T7 (MSMg01no457_l10.b1)MSMg01-457L10.TJ (MSMg01no457_l10.g1)
ACCAG543714AG543715
length8071,240
length of high quality
(start - end)
413 (73 - 485)---
definitionCHROMAT_FILE: MSMg01no457_l10.b1 PHD_FILE: MSMg01no457_l10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:02 2005CHROMAT_FILE: MSMg01no457_l10.g1 PHD_FILE: MSMg01no457_l10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:02 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCATTTATTCATCCATCTGTACAATGAAAATCTACTTAAGTATATG
TAACATTTACCAATGATTTATCATAGAGGGTAGATCACATTTATGCTTAT
CTTTAAATGTAAAGTTTATTCCATATACCCTGAGATTTCACTTTCAACTC
CTACCTTAAGGATGTGAGTTAAAAGCAGCAGAACCTCCTGCTTGCTAAGG
GAACCCTGGTCATCAGATCCTCAGATCCGCATCTTAGTGACATTTAACTT
ACTATGTTTTCTTCAAAGATATATATTATAAGTGCATATTAAATGGGAAG
AATTTACAATCTTTCAAATGAAAAAAGTCCTTGGGAATTTCATACATGAG
TACTGTACTAGGATCATTTCCATCTCTTCCCCTGCTGCAGATTATCCCAT
GTCCTCCAGTTCTTTCTCATGTTCAGACTTCTGCTTTGATTTTGATTGGT
GCGTGCACCCAGGAAATAGTTGCAATTATAATTGCATCCTATAAGTCCAC
TTAATGGTGTTTCGTATGTAAATGTCTTTATGAATGTCCACTTGGGAATT
GGGAAACCCTTCATTGGGTTCCCCTTCTTAAAAAAATCTATTCTCCCCCT
CCTCCGGAAATTTTTTTCTTGTTTGTCCTTACTCTTGTTTTTTTTCTCCC
TTTGGTATATATCTTTCCATTCTTCCCTTTCTTATATATTACGCCTCGGG
TGTCTCCTCCATTTTTAAATGCATATACACATGTCTCTTACATTTATCTT
TTTTCCN
TACGGTACAGAAGAGAATACATAAAAGCGTAGTGGGTGTGCTGCGTGCTT
GGGTGTCTCTCTCTCTCATCTACGCTNTTTGGTTTTTGTTGCGTACTGTT
ACTCACAGCCGCGGAACGATGACGACAGGAGTANTGTGTGGTTTTCATTC
TATATATCAATACATCACGTAGATCGATCCTGACGTCACCAACGTAAGCA
TCCTCCTACATCACAATCATATATCCTATAGTGCTGTATGATTTTACCAT
GTATTATCAATCATATCACAGCTTAAGCATAGACGCGAAGATCATAACAA
CGGACCTTGATAGTAAATGCACCCCGCCCCTTACTTCACTCTCACTTTCT
CATACACTTATGTTACTCACGCTTCGCCTATATTCTTTGTCATGCATGTA
TAACGTAAAGTGAGTGGTAATGCGAGCTAGGAATACTGGGATTGACCACT
AGTTATAACTCAGTCAAAATAGATAACAAAACACACAGACAACACACATA
CAACAATTGCTCTACCGAACGAAGAGAGCAGCTACTCTAGTGTATTATTT
AACATCGAAGACCGAATTAGTGTATTATACTTGAATACTATGTATCGTAA
CGCGTAGAATCACAGTAACATATGTCAATGAGCACCAGAACTCACAGGAG
CCCCTCTTTTTTCGATGTGCCACTACGAGGTCCATGGCCTGTGTAGCTAT
TGTCTGATATTAGACACAACCTTAACAAATAGTGATCTAGCACTATGCGT
GGAGCCGGTTGCGCTTCTATTGTATACCTACTGTAAGATCGACACAACAG
CATGTTGTGATGCAGTGTGAGGCTGTGCTTAAGTCAGAGTCGTGCGGTAA
TAACTAACGAAGTGCATCAGTGTGTGCGTGAGATTGTACTAATGAAATCG
TGTGCATGACATGGCCAGATCCGCCGTCGCTTGTTATATGATCAGCGGGG
TACAACGTCGGATGATTACACTGCACGCGACGCATCTGGTTGTTGTCGTC
CTTTAGCATCGCGCGTCTGTTATGCCCGANTCGCCGCTGACAGCGACTCG
TTGCCTTGACTGTGATAACACTGATCGACCTGTCTGATCTACGAACAGCC
CTAGTCATTGTATCTGCGCTTCACTAAGGTAGCGTATACCCNGTATAAGC
ACTAATCACCACATGCGTGGTTACACACGCCAGATACGTAGCTTAGTGTA
TGTGTTCATTAGCGACTGATTCACTTGATATGATCTGGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no457_l10.b1 MSMg01no457_l10.b1 CHROMAT_FILE:
MSMg01no457_l10.b1 PHD_FILE: MSMg01no457_l10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:30:02 2005
         (413 letters)



>mm_chr1_69929764_69930573
          Length = 810

 Score =  455 bits (235), Expect = e-132
 Identities = 268/281 (95%), Gaps = 6/281 (2%)
 Strand = Plus / Plus

                                                                       
Query: 136 aaggat---gtgagttaaaagcagcagaacctcctgcttgctaagggaaccctggtcatc 192
           ||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 aaggatgtggtgagttaaaagcagcagaacctcctgcttgctaagggaaccctggtcatc 392

                                                                       
Query: 193 agatcctcagatccgcatcttagtgacatttaacttactatgttttcttcaaagatatat 252
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 393 agatcctcagatccgcatcttagtggcatttaacttactatgttttcttcaaagatatat 452

                                                                       
Query: 253 attataagtgcatattaaatgggaagaatttacaatctttcaaatgaaaaaagtccttgg 312
           |  |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 453 a--ataactgcatattaaatgggaagaatttacaatcttccaaatgaaaaaagtccttgg 510

                                                                       
Query: 313 gaatttcatacatgagtactgtactaggatcatttccatctcttcccctgctgcagatta 372
           |||||||||||| ||||||||||||||||||||||||||||||||| |  ||||||||||
Sbjct: 511 gaatttcatacacgagtactgtactaggatcatttccatctcttcctc-actgcagatta 569

                                                    
Query: 373 tcccatgtcctccagttctttctcatgttcagacttctgct 413
           |||||||||| ||||||||||||||||||||||||||||||
Sbjct: 570 tcccatgtcccccagttctttctcatgttcagacttctgct 610


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 413
Length of database: 810
Length adjustment: 9
Effective length of query: 404
Effective length of database: 801
Effective search space:   323604
Effective search space used:   323604
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)