BAC Information

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BAC

Clone NameMSMg01-457M11
Chromosome1 (Build37)
Map Location 110,671,723 - 110,671,963
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC435640, EG626474
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-457M11.T7 (MSMg01no457_m11.b1)MSMg01-457M11.TJ (MSMg01no457_m11.g1)
ACCAG543764AG543765
length739855
length of high quality
(start - end)
242 (330 - 571)---
definitionCHROMAT_FILE: MSMg01no457_m11.b1 PHD_FILE: MSMg01no457_m11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:07 2005CHROMAT_FILE: MSMg01no457_m11.g1 PHD_FILE: MSMg01no457_m11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGACGAT
CCGCGGAATTCACAGCATTTCAGACTCAAGTGTCTGAGGAGGACTTAAAA
AGTTTTCAAAGTCCTTAATCAACAGTGAAATGAAAATCAAAGCAACCCTG
AGATTCTACCTTACACCAACCAGAATGACTAAGATCAAAACCTCAGGTGA
CAACACATGTTGGTGAGGATATGGAGAAAGAGGAAAACTCCTCCATTGCT
GGTTGTATTGCAAAGGGTTACAATCACTTCATTCTGGAAATCAATCTGGA
GGTTCCTAAAAAAATTGGAAATTGATCNATCTGAAGACCCAGCAATATCA
GTCTTGGGCATGTACCCAAAAGATTACCCACCATGCTACAAGGGTACTTT
TCCCCATATATTCATAATGGCCTTGTTTTTATTTGCTGCTTTTATATGGC
TATATTGGCAGCAAAAATCTTTAAATCTAAAAAATACCCTTTGTAAGCAT
GCTCATAGTCATGCTCTTAGAAATATATGCATAAGTTTAAAGACCCTTTG
AAAATATTCCCACATGCATAAATACTCATTGAGTATGTATTTCATCTTAG
TGTCCAATGCAATAAACAGGTTTGGAAATAATTACACATCTCCTGATAGC
ATTTTTTGTTAGGAATTTGGAATTAACTTTTTACGGTCGTCGTCCCTTCT
TTATTTGAAAACACTTTTTCCAGTACCTTAAATAAATTN
NTCCACGCACTGTCATCCTGCTTCCAGCCGTTCTCAAATAGAGGNGAANT
ATAGAATTTCTCTCAAAAAATCCGTGCTTTTTAGTTAAGTATTCAAATAT
AATGAGGTGGCATTTTTACTCAATTCAAGACTGCGTCTATGGAGGCTGCC
ATCAAAAACTCAATTTGCACAGCTTTCCTGTACCAGGCATTGATTTCCTG
CTGTTGACATTGCCTTACTATCATTTATACATCAGTTTGTTCTATCTATT
TTTGTCTGCCCCGCTCTTAAGCTAGTTCTTACGTCCCCTCGTCACACTGA
TCTTACGAACCGCGCTTTTTTTTTTTTCACCCGCACTTTACCTTTCGTTC
TGTTTTTCCTTTTTTGTTATTACTTTTACTCTGCTCTCCCTATTTCTCAT
TCTTTACTTATTCTTCTTTACCTTGTTTCCTCTCCTTTTTTACCACATCT
CGACTTCTTTTTTAACACTTCCTCGCCCTTTCTATCTTTAATATCCATAT
TTTTCTTCTGTCATTATTATCTTAAACTCTTTCATTTCTTAATCCTTCTT
TTATCATCCAACCATCCCATTCTCTCCCATATCTTCATCTATCTCTTTTC
CCCTTATCCATACACTATTTATCCCCTATTTTATCTTCTACATCACTCTT
TCTTTTTTTTTTGACTTTTATATGACTTATATTCTCATTATGTTATCAAT
CAACTATTATCCCTTATTTCCTTATATTTACTCTTTATTTACCTCCCCCC
ACTTTTTTTCTTCTTTTTCCTTCTCATTTTTCTTATCCTTCTCTTTCCCT
GCTTATTCTCTCCATCCCTTTTCCCTTCTTTTTCTTTTATCACCCTCCTA
TTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no457_m11.b1 MSMg01no457_m11.b1 CHROMAT_FILE:
MSMg01no457_m11.b1 PHD_FILE: MSMg01no457_m11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:30:07 2005
         (242 letters)



>mm_chr1_110671424_110672064
          Length = 641

 Score =  437 bits (226), Expect = e-127
 Identities = 238/242 (98%), Gaps = 1/242 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgaagacccagcaatatcagtcttgggcatgtacccaaaagattacccaccatgctac 60
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 tctgaagacccagcaataccagtcttgggcatgtacccaaaagattacccaccatgctac 481

                                                                       
Query: 61  aagggtacttttccccatatattcataatggccttgtttttatttgctgcttttatatgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 aagggtacttttccccatatattcataatggccttgtttttatttgctgcttttatatgg 421

                                                                       
Query: 121 ctatattggcagcaaaaatctttaaatctaaaaaataccctttgtaagcatgctcatagt 180
           |||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct: 420 ctatattgacagcaaaaatctttaaatttaaaaa-taccctttgtaagcatgctcatagt 362

                                                                       
Query: 181 catgctcttagaaatatatgcataagtttaaagaccctttgaaaatattcccacatgcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 catgctcttagaaatatatgcataagtttaaagaccctttgaaaatattcccacatgcat 302

             
Query: 241 aa 242
           ||
Sbjct: 301 aa 300


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 641
Length adjustment: 9
Effective length of query: 233
Effective length of database: 632
Effective search space:   147256
Effective search space used:   147256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)