BAC Information

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BAC

Clone NameMSMg01-457N10
Chromosome1 (Build37)
Map Location 7,868,142 - 7,868,388
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665015, LOC665027, LOC100039347, LOC435608, Pcmtd1, LOC545302, LOC665063, LOC665069, LOC100039408
Downstream geneSntg1, LOC100039474, LOC620444, EG665007
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-457N10.T7 (MSMg01no457_n10.b1)MSMg01-457N10.TJ (MSMg01no457_n10.g1)
ACCAG543810AG543811
length763756
length of high quality
(start - end)
486 (45 - 530)247 (77 - 323)
definitionCHROMAT_FILE: MSMg01no457_n10.b1 PHD_FILE: MSMg01no457_n10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:12 2005CHROMAT_FILE: MSMg01no457_n10.g1 PHD_FILE: MSMg01no457_n10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCG
GAATTCTAATTTGTTCAGGAGCTTGAGATGCAACTGTCACCAACATAACA
CAAGTGATGAAAGTTGAAAACCCCATGCATTGATGACAGGATAGAAGAAA
TGGATATATCATTCAAGGAAAATGTTAAATCTAAAAAGTCCAGATACAGC
AATCTAAGAAATTTTAGACAACATGAAAAGACCAAATATAAAGATGTTAT
AAACTGAATATTGGAAAGAAACCCAGCTCAAAGGATACAAAACTGATTTC
CACTAGATCATAGAAGATAATTATTCTAACCAAAGGAAGGATATTCCTAT
CAAAGTAAAAGAAGCATACTGAAAACCAAATATACTGGACCTTAAAAGAA
CATCCATATGAACAAGATAATATTTTCTGAACAGAACACAGTATAGATGA
TGAGATCAACAATGAAAAAATGGCAAGTGATGAAACTGAAAATCTTTAAG
GCAAAAGACCCTGTTAATCTACTAAAGAGTCAGCCTTCAGAATGGGAAAA
TATTTATACCAACTCCAAATCTGGTAGCACACTAATGTATGTGTGTGTTG
CTTAATGAACTAACTATAAAAACCCTAACCAATCTTGGTAAATTGGTGTC
CCGACTTACTAAGAAAATTTCTCTATAAAGAAAAATAACTGGGTCGAAAA
ATTTTCTAAAAAGTTCTCTATTCCTTTTCTTTCTAAGTAATGGGTATTTA
AACTTTTTTTTTA
NNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCACATCTCCTATGACAGGGGAAAG
TATGCAGAGGTCTGGGTCTCAGCCCTGCCTCTTGGCTGAAGATGAAGGCC
AGAAAAGCTCAACTTTCTTTTAATTAGAGGGTAAATTTATTTTGAGTGTT
GTTATGTCTCATGACATTAAGAAAAAAATCAGCAGGTATAAAAAGCAATG
TTATATTTATGTAACAAATGAAGTACTTTTAATAAAGGATTTATTTGTGA
AGATTAAGAAGGTCGATATTCTTTTTAGNGTATGAAGGACCTAAAAATCT
TAAATTTTGAGTGTCTGAATCTTATATAAGACTTAAAAGATTGAATTTAG
GGATTCAGTAATTTTGATAAAAATTTTAATGTCAACGTTCCATGCATCAA
TATAAAATATCTACCCAAATTGATAGAATTATCCTAACATTGATTTGGNT
TTGCTGCTATTTAAATGTCCAAACTTAAAAAAATAAACTTATGTCTAATT
AATGCTTATTANAAATAGGCTGGTTCTTGCCCCACATTTTATTTAAATAT
TGACAGTACTTATTACCTAAGTCTGCCTTTCCCATTTCTGACCCCTGAAC
CCAGAAAACCTCTTTTTTTTTTTTTAGTCCAAAGCCCTAACTAACGTATT
TTTAGGGTACGAAAAATACCTTTTTTTTTGGTGTTCTTGTGCTCTCTTAT
GTTAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no457_n10.g1 MSMg01no457_n10.g1 CHROMAT_FILE:
MSMg01no457_n10.g1 PHD_FILE: MSMg01no457_n10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:30:12 2005
         (247 letters)



>mm_chr1_7867942_7868588
          Length = 647

 Score =  431 bits (223), Expect = e-125
 Identities = 241/247 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacatctcctatgacaggggaaagtatgcagaggtctgggtctcagccctgcctcttggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacatctcctatgacaggggaaagtatgcagaggtctgggtctcagccctgcctcttggc 260

                                                                       
Query: 61  tgaagatgaaggccagaaaagctcaactttcttttaattagagggtaaatttattttgag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgaagatgaaggccagaaaagctcaactttcttttaattagagggtaaatttattttgag 320

                                                                       
Query: 121 tgttgttatgtctcatgacattaagaaaaaaatcagcaggtataaaaagcaatgttatat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | 
Sbjct: 321 tgttgttatgtctcatgacattaagaaaaaaatcagcaggtataaaaagcaatgttaaag 380

                                                                       
Query: 181 ttatgtaacaaatgaagtacttttaataaaggatttatttgtgaagattaagaaggtcga 240
             ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct: 381 agatgtaacaaatgaagtacttttaataaaggatttatttgcgaagattaagaaggtaga 440

                  
Query: 241 tattctt 247
           |||||||
Sbjct: 441 tattctt 447


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)