BAC Information

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BAC

Clone NameMSMg01-457N19
Chromosome1 (Build37)
Map Location 192,986,108 - 192,986,390
singlet/doubletsinglet
Overlap genenone
Upstream geneProx1, LOC100039394, EG666975, Rps6kc1, Angel2, Vash2, LOC100039445, LOC666987, 9630055N22Rik, 1700022P22Rik, Tatdn3, Nsl1, 9130211I03Rik
Downstream gene4933417M04Rik, Atf3, Nenf, 2310028N02Rik, Ppp2r5a, LOC100039501, LOC667044, Dtl, Ints7, Lpgat1, Nek2, 4930557M11Rik, Slc30a1, 3322402L07Rik, LOC100042611, Traf5, Traf5, LOC100042625, Rcor3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-457N19.T7 (MSMg01no457_n19.b1)MSMg01-457N19.TJ (MSMg01no457_n19.g1)
ACCAG543828AG543829
length764778
length of high quality
(start - end)
285 (77 - 361)250 (83 - 332)
definitionCHROMAT_FILE: MSMg01no457_n19.b1 PHD_FILE: MSMg01no457_n19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:14 2005CHROMAT_FILE: MSMg01no457_n19.g1 PHD_FILE: MSMg01no457_n19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCTCCATTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTGTGTATCCCTTGTGAGACTCCTGGCTGCACCTGGATG
AGGACTCCCTCTCCATGATGTGGGTGCTCTCAGCTATGGCTGCTGCTCTG
CTTGTGATACACTCAAGGGTCGGAAATGGGAGAGGGGATCAGCACAGGCT
ATTAAGGCAGTCTGGACTTAGCAATTTTGCACACACCCGTGCACCTGAGA
CTCACGTGTCTGTGCTTGGGTGTTTGGGTCATGTGTATATGTTTTTAGAG
ACAGCTATGAGTATATTCCTATTTTTTTGATTTAGCATGCCAACAATGGA
AACAGTTCATGTATCTAAATGAGAGTTCATACTATGTAGTAGGTGGGTTA
TTCAGGCATCACATTTTCCTCATAATGTTGAAAAGGATCTCATCGCATAA
TAGGTTATCATTTGCTTGATACGACAGTTCACAATACCGTCTAGATATTT
ATAGTATATTCTATCTACTTTCTGTGTTTGTGCTATAAATCTTCTAATTC
CCTATCTTTATCTTGTCCCTTCTTTTCTGTTTTATCTTCTCGGTCCTTTT
TCTATACATCGTCATAATTCTCTTATCCTATCTCACCTTACGTCATATTC
TCCTTTTTGCTTTTTTCTTTTTTTATCCCTTTTTATTTGCCCTTTTCCTC
TGATGCTTTTCTTTTTTGCACTTCTTGTTTTTTCCATTTTTTCTCTCACT
CTCCTTCTTCTTTT
NNNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCACGTATACCCAAGTAA
CACTTAACCCTGCCCCCCAAGTTATCCCCGATTGATGAATAAAGATGCCT
ACAACCTATAGCTGGGCAGAATTGAGATAGGTGGAGCATTTGGTTCCCAA
GCTTGGGGCTAGAGGAAAACCATGAGGAAGAGAACCAGGAGAGAGAAGGA
GAGAGGAAGACGCCTTGGGGCAAGGGATCGTAAGAACAGTTCACGTGGGC
GAGCCACTGGAGTTAAGAGCAGCCCATGTGGATTTTTTCATAACTCAGGG
TTACTGATAGGGAGGTAAAATAATATGAATCTCCCTCTTAGCCATCCCTT
CCTCATCTCCTAGTTGGTCTCTGCTTTCTCTGGCCTCCCCAGAGCTACTC
ATTGCTTTCTTCTTTCCTCACCAATGAGTCACTGTTTGAACTGCCCCTTC
TGGGTAGGACCCCTCAATTTTAAAGCTGGCTTTAAGCCTTGGGGCCCTAC
TAACAGCACTTTCTAAAAAATTCCTCCCGGGGAGCCCGAGAAAGACCTCC
GAATTCCGGGGTTTTCTATTTTATTTTTCCCCGGGCTTCTAAATTATATA
TTATTTTTCAGAATCTGGGGACCTCCTTTTTTTTTTTTTTTGCCTGTGCC
CCCCCCGGCGCTTCATTTTTTTCTTGGGGAGAAATCATGGTCTACTCCTT
CCTTACATTATTTTTATTTTTTCTGTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no457_n19.b1 MSMg01no457_n19.b1 CHROMAT_FILE:
MSMg01no457_n19.b1 PHD_FILE: MSMg01no457_n19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:30:14 2005
         (285 letters)



>mm_chr1_192985908_192986592
          Length = 685

 Score =  505 bits (261), Expect = e-147
 Identities = 277/289 (95%), Gaps = 12/289 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   gagactcctggctgcacctggatgaggactccctctccatgatgtgggtgctctcagcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 gagactcctggctgcacctggatgaggactccctctccatgatgtgggtgctctcagcta 424

                                                                       
Query: 61  tggctgctgctctgcttgtgatacactcaagggtcggaaatgggagaggggatcagcaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 tggctgctgctctgcttgtgatacactcaagggtcggaaatgggagaggggatcagcaca 364

                                                                       
Query: 121 ggctattaaggcagtctggacttagcaattttgcacacacccgtgcacctgagactcacg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 ggctattaaggcagtctggacttagcaattttgcacacacccgtgcacctgagactcacg 304

                                                                       
Query: 181 tgtctgtgcttgggtgtttgggtcatgtgtatatgtttttagagacagctatgagtatat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 tgtctgtgcttgggtgtttgggtcatgtgtatatgtttttagagacagctatgagtatat 244

                                                            
Query: 241 tcct------atttttttgatttagcatgccaacaatggaaacagttca 283
           ||||      |      ||||||||||||||||||||||||||||||||
Sbjct: 243 tcctagcaaaa------tgatttagcatgccaacaatggaaacagttca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)