BAC Information

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BAC

Clone NameMSMg01-457N21
Chromosome1 (Build37)
Map Location 117,057,875 - 117,058,232
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC227506, Cntnap5a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-457N21.T7 (MSMg01no457_n21.b1)MSMg01-457N21.TJ (MSMg01no457_n21.g1)
ACCAG543832AG543833
length796781
length of high quality
(start - end)		418 (67 - 484)356 (82 - 437)
definitionCHROMAT_FILE: MSMg01no457_n21.b1 PHD_FILE: MSMg01no457_n21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:15 2005CHROMAT_FILE: MSMg01no457_n21.g1 PHD_FILE: MSMg01no457_n21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNAAATTATTCCTGCTGTCGCTATACGACTCCTATATTCAGAGGATCCGC
GGAATTCACAACTCACTTAAAGAAATACAGGAGAACACTGCTAAAGAGTT
ACAAGTCCTTAAAGAAAAACAGGAAAACACTGCTAAAGAGTTACAAGTCC
TTAAAGAAAAACAGGAAAACACAACCAAACAGGTAGAAGTCCTTATAGAA
AAACAGGAAAACACATCCAAACAGGTGATGGAAATGAACAAAACCATACT
AGACCTAAAAAGGGAAGTAGACACAATAAAGAAAACCCAAAGTGAGGCGA
CGCTGGAGATAGAAACCCTAGGAAAGAAATCTGGAACCATAGATGCCAGC
ATCAGCAACAGAATACAAGAGATGGAAGAGAGAATCTCAGGTGCAGAAGA
CTCCATAGAGAACATCGGCACAACAATCAAAGAAAATGGAAAATGCAAAA
AGATCCTAACTCAAAACATCCAGGAAATCCAGGACACAATGAGAAGAACA
AACCTACGGATAATAGGAGTGGATGAGAATGGAGAATTTCAACTCAAAGG
AACCAGCAAACTTCTTCCANCAAAATTATTGAAGAAAAACTCCCCAAACC
AAAAAAAAGAGATGGCCCCTGGAAATTTCAAAAAAGCTCTACGGAATTCC
CAAATAAACTGGGACCGGAAAAAAAAATTCCCTCCCCCACCCTTATTTAA
TCCTAAAAACCCAAAGGGGCGTTTATTAAGAGATGGGAAAACTTTAATCC
TCCTCCGGGGGGAAAAAAGTCTCTGTGCTCTCTTATATTTGGTGGN

TTTTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATAAAATTTGTTCCCTTTT
GATTTTTATTTTTACTACTTTTCTAGGTAGTCAAGGATAACCTTGAACGT
GTGAGCTAATAGAACATCTTTGCTTTAGGCATGCTGGGAACAGAGGTATC
ATCAAACTTAGCTTATGTGTCTCTGTGGATTAAAGCCAAGGTTTCAGATC
TATCAGGCAATTACTCTACCAATGGAACTATATCCCTAATCCATTTCCTG
CTAGAACATGGATAAATATATTGAAATATCCAATGTGACTCCTACAATAT
TGGAAAGCAGGTGGAAGAAATGACCAAAGAAATCACATATGTGCTAGAAT
ACAGTGCTTATTGGTGTGTTTGGGTGAGTTATCTAGTGCTAATTTAAATT
TATTTGGCAGGAGTTGTTTGTTTAATCATAACTGTTTCCAGAACCCACTC
AAGATTGCCAGATCTTGTTGAAATAATAACAAGGCAAGTAGAAAACAGTT
GGACAAAATACTTTTTCTCATGCTTGGAGAAAAAACCCGAAAAGAAACAA
TTTTGTTTAAAATTCTCTTAAATTCGGATTCTCCCAGGCCCCCCGGAACA
TTTGTGTATAAAAGATAAAAAGAACTCCCCCCTTTTTTATTTTTTGTGAA
TTATCGTGCCCACATTTTTTTTTTGTTAATAACCTTTTCTTCCTTCCATT
GTTTAATTCCTCTCCTATTGTTTTTCTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no457_n21.g1 MSMg01no457_n21.g1 CHROMAT_FILE:
MSMg01no457_n21.g1 PHD_FILE: MSMg01no457_n21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:30:15 2005
         (356 letters)



>mm_chr1_117057676_117058432
          Length = 757

 Score =  638 bits (330), Expect = 0.0
 Identities = 351/358 (98%), Gaps = 2/358 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ataaaatttgttcccttttgatttttatttttactactttt-ctaggtagtcaaggataa 59
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 200 ataaaatttgttcccttttgatttttatttttactactttttctaggtagtcaaggataa 259

                                                                       
Query: 60  ccttgaacgtgtgagctaatagaacatctttgctttaggcatgctgggaacagaggtatc 119
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ccttgaacgtatgagctaatagaacatctttgctttaggcatgctgggaacagaggtatc 319

                                                                       
Query: 120 atcaaacttagcttatgtgtctctgtggattaaagccaaggtttcagatctatcaggcaa 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 atcaaacttagcttatgtgtctctgtggattaaagccaaggtttcagatctatcaggcaa 379

                                                                       
Query: 180 ttactctaccaatggaactatatccctaatccatttcctgctagaacatggataaatata 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 380 ttactctaccaatggaactatatccctaatccatttcctgctagaacatggataaataca 439

                                                                       
Query: 240 ttgaaatatccaatgtgactcctacaatattggaaagcaggtggaagaaa-tgaccaaag 298
           ||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct: 440 ttgaaatatccaaagtgactcctacaatattggaaagcaggtggaaaaaaatgaccaaag 499

                                                                     
Query: 299 aaatcacatatgtgctagaatacagtgcttattggtgtgtttgggtgagttatctagt 356
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 500 aaatcacatatgtgctagaatacagtgcttatttgtgtgtttgggtgagttatctagt 557


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 356
Length of database: 757
Length adjustment: 9
Effective length of query: 347
Effective length of database: 748
Effective search space:   259556
Effective search space used:   259556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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