Query= MSMg01no458_d10.b1 MSMg01no458_d10.b1 CHROMAT_FILE:
MSMg01no458_d10.b1 PHD_FILE: MSMg01no458_d10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:30:44 2005
(466 letters)
>mm_chr1_194739043_194739908
Length = 866
Score = 787 bits (407), Expect = 0.0
Identities = 452/471 (95%), Gaps = 11/471 (2%)
Strand = Plus / Minus
Query: 1 cacagcagtggaaccaaagaaagcacacagctgttcttaaaattaaaagtttctgctaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 cacagcagtggaaccaaagaaagcacacagctgttcttaaaattaaaagtttctgctaga 433
Query: 61 gatgaaccccagtcctacctgggaaagagatgtgctggtgtagataaagagaacagcagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 gatgaaccccagtcctacctgggaaagagatgtgctggtgtagataaagagaacagcagc 373
Query: 121 acggtgaccactaggggaaagc-gagaaagccacatgatctgggccttgtgagagttcat 179
| |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 372 atggtgaccactaggggaaagcag-gaaagccacatgatctgggccttgtgagagttcat 314
Query: 180 gcccagttctgaagcaatgtttctatacaggtcattggacacagagtctgagtgtttgtg 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 313 gcccagttctgaagcaatgtttctatacaggtcattggacacagagtctgagtgaatgtg 254
Query: 240 tactcctcgtgggattaactaatgaaaagtagatttaaatgtgtttggtttactttttcc 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 tactcctcgtgggattaactaatgaaaagtagatttaaatgtgtttggtttactttttcc 194
Query: 300 ttttctcccctccctcccctcccctcccctccc----ctcttctttccttttcttttctt 355
||||||||||||||||| ||||||||||||||| ||| || ||| ||| |||
Sbjct: 193 ttttctcccctccctcctctcccctcccctccctcccctcccctcccct---ctt--ctt 139
Query: 356 ttcttttcttttcttttcttttcttttcttttcttttcttttctttttgagataggtttc 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 ttcttttcttttcttttcttttcttttcttttcttttcttttctttttgagataggtttc 79
Query: 416 tcaatgtagcagtcattggctatccttgaacttgctttgtagaccagactg 466
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78 tcaatgtagcagtcattggctatccttgaacttgctttgtagaccagactg 28
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 866
Length adjustment: 10
Effective length of query: 456
Effective length of database: 856
Effective search space: 390336
Effective search space used: 390336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no458_d10.g1 MSMg01no458_d10.g1 CHROMAT_FILE:
MSMg01no458_d10.g1 PHD_FILE: MSMg01no458_d10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:30:44 2005
(316 letters)
>mm_chr1_194559762_194560477
Length = 716
Score = 603 bits (312), Expect = e-177
Identities = 315/316 (99%)
Strand = Plus / Plus
Query: 1 ctgcacaggcttttgatgttaaaaatagcttctcattttccagaatgaattaattcctga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgcacaggcttttgatgttaaaaatagcttctcattttccagaatgaattaattcctga 260
Query: 61 gcaaacactagctgatggcatgccagttatatgtttggcaccacaaacagctttctggtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcaaacactagctgatggcatgccagttatatgtttggcaccacaaacagctttctggtc 320
Query: 121 taccaccatttaacaccaaccggggtacatgagtgcccctgacattccacatccccacag 180
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taccaccattcaacaccaaccggggtacatgagtgcccctgacattccacatccccacag 380
Query: 181 catctgtggtgtttccatgtttcagcagaacctttctggaaagaacatagtctcatccca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catctgtggtgtttccatgtttcagcagaacctttctggaaagaacatagtctcatccca 440
Query: 241 ttgtgatttaatatgaatttacaacagtctggcaatggtggttttaaaagcctgaatgat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgtgatttaatatgaatttacaacagtctggcaatggtggttttaaaagcctgaatgat 500
Query: 301 gtggtacttggttaga 316
||||||||||||||||
Sbjct: 501 gtggtacttggttaga 516
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space: 217049
Effective search space used: 217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
